Jatropha Genome Database

JcCB0049771.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049771.20 - phase: 0 /partial
         (140 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64370.1 | Symbols: BETA-UP | BETA-UP (beta-ureidopropionase)...   276   3e-75

>AT5G64370.1 | Symbols: BETA-UP | BETA-UP (beta-ureidopropionase);
           beta-ureidopropionase | chr5:25739264-25741031 FORWARD
          Length = 408

 Score =  276 bits (706), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 136/140 (97%)

Query: 1   CFHPSATVGELSEPMWPVEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGKPQHSDFGH 60
            F+PSATVGELSEPMWP+EARNAAIANSYFVGSINRVGTE+FPNPFTSGDGKPQH+DFGH
Sbjct: 269 VFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHNDFGH 328

Query: 61  FYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYELYADMLASY 120
           FYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQ KDKWGFRMTARYE+YAD+LA Y
Sbjct: 329 FYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQYKDKWGFRMTARYEVYADLLAKY 388

Query: 121 LKPDFEPQIISDPLLHKKSS 140
           +KPDF+PQ++SDPLLHK S+
Sbjct: 389 IKPDFKPQVVSDPLLHKNST 408