Jatropha Genome Database

JcCB0049611.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0049611.20 - phase: 0 /partial/short
         (45 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29185.1 | Symbols:  | unknown protein | chr3:11155092-111572...    55   1e-08

>AT3G29185.1 | Symbols:  | unknown protein | chr3:11155092-11157207
           REVERSE
          Length = 396

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 30/43 (69%)

Query: 1   MADDLVTFDGGYQMTLLPGGMYMGYPSDIAKNKAEPLSLMLSL 43
           M+ DLVTF  GYQMTLLPGGMYMG P D++K  A+  S  L  
Sbjct: 321 MSKDLVTFAEGYQMTLLPGGMYMGCPCDVSKCVADLKSFHLEF 363