Jatropha Genome Database

JcCB0047491.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0047491.20 + phase: 0 /partial
         (319 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40610.1 | Symbols:  | glycerol-3-phosphate dehydrogenase (NA...   485   e-137
AT2G40690.1 | Symbols: GLY1, SFD1 | GLY1; glycerol-3-phosphate d...   111   8e-25
AT2G41540.3 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...    54   2e-07
AT2G41540.2 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...    54   2e-07
AT2G41540.1 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding / gl...    54   2e-07

>AT5G40610.1 | Symbols:  | glycerol-3-phosphate dehydrogenase (NAD+)
           / GPDH | chr5:16265071-16267258 REVERSE
          Length = 400

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/263 (88%), Positives = 248/263 (94%)

Query: 37  SKVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEALPSGEKLTDVINRTNENVK 96
           SKVTVVGSGNWGSVAAKLIASN LKL SFHDEVRMWVFEE LP+GEKL DVIN+TNENVK
Sbjct: 55  SKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVLPNGEKLNDVINKTNENVK 114

Query: 97  YLPGIKLGKNVVADPDLDNAVRDANMLVFVTPHQFMEGICKRLVGKIKEGVEAISLIKGM 156
           YLPGIKLG+NVVADPDL+NAV+DANMLVFVTPHQFM+GICK+L GKI   VEAISL+KGM
Sbjct: 115 YLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDGKITGDVEAISLVKGM 174

Query: 157 EVKMEGPCMISSLISSQLRVNCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWVQLF 216
           EVK EGPCMISSLIS QL +NCCVLMGANIANEIAVEKFSEATVGY+G+REIA+ WVQLF
Sbjct: 175 EVKKEGPCMISSLISKQLGINCCVLMGANIANEIAVEKFSEATVGYRGSREIADTWVQLF 234

Query: 217 STPYFMVTPVQDVEGVELCGTLKNVVALAAGFVDGLEMGNNTKAAIMRIGLREMRAFSKL 276
           STPYFMVTPV DVEGVELCGTLKNVVA+AAGFVDGLEMGNNTKAAIMRIGLREM+A SKL
Sbjct: 235 STPYFMVTPVHDVEGVELCGTLKNVVAIAAGFVDGLEMGNNTKAAIMRIGLREMKALSKL 294

Query: 277 LFSSVKDSTFFESCGVADVITTC 299
           LF SVKDSTFFESCGVADVITTC
Sbjct: 295 LFPSVKDSTFFESCGVADVITTC 317


>AT2G40690.1 | Symbols: GLY1, SFD1 | GLY1; glycerol-3-phosphate
           dehydrogenase (NAD+) | chr2:16974107-16976241 FORWARD
          Length = 420

 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 19/265 (7%)

Query: 38  KVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEALPSGEKLTDVINRTNENVKY 97
           KV V+G G++G+  A  +A     L     EV M V +  +         IN  + N KY
Sbjct: 89  KVVVLGGGSFGTAMAAHVARRKEGL-----EVNMLVRDSFV------CQSINENHHNCKY 137

Query: 98  LPGIKLGKNVVADPDLDNAVRDANMLVFVTPHQFMEGICKRLVGKIKEGVEAISLIKGME 157
            P  KL +NV+A  D   A+ DA+  +   P QF     + +   +  G+  ISL KG+E
Sbjct: 138 FPEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLE 197

Query: 158 VKMEGPCMISSLISSQL---RVNCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWVQ 214
           +      M+S +I   L   R     L G + A E+ +     A V    ++++A    Q
Sbjct: 198 LNTLR--MMSQIIPIALKNPRQPFVALSGPSFALEL-MNNLPTAMVVASKDKKLANAVQQ 254

Query: 215 LFSTPYFMVTPVQDVEGVELCGTLKNVVALAAGFVDGLEMGNNTKAAIMRIGLREMRAFS 274
           L ++ Y  +    DV GVE+ G LKNV+A+AAG VDG+ +GNN+ AA++  G  E+R  +
Sbjct: 255 LLASSYLRINTSSDVTGVEIAGALKNVLAIAAGIVDGMNLGNNSMAALVSQGCSEIRWLA 314

Query: 275 KLLFSSVKDSTFFESCGVADVITTC 299
             +    K +T     G  D++ TC
Sbjct: 315 TKM--GAKPTTITGLSGTGDIMLTC 337


>AT2G41540.3 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 51/261 (19%)

Query: 38  KVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEA-----LPSGEKLTDVINRTN 92
           ++  VG+G WGSV A L+  +      F D+ ++ ++  A       + E L +VIN   
Sbjct: 43  RIVSVGAGAWGSVFAALLQES---YGGFRDKFQIRIWRRAGRAVDRETAEHLFEVINSRE 99

Query: 93  ENVK-------YLPGI--KLGK---------------NVVADP--------DLDNAVRDA 120
           + ++       YL  +  +LG                N+V  P        +L  AV DA
Sbjct: 100 DILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDA 159

Query: 121 NMLVFVTPHQFMEGICKRLVGKIKEGVEA---ISLIKGMEVKMEG-PCMIS--SLISSQL 174
           +++V   P      + + +    KE +     ISL KG+E  +E  P +I+   +I    
Sbjct: 160 DIVVNGLPSTETREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQAT 219

Query: 175 RV---NCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWVQLFSTPYFMVTPVQDVEG 231
            V   N   L G NIA EI  ++++ A +   G  +  +   +    P+F+V    D+  
Sbjct: 220 GVPIDNVLYLGGPNIAAEIYNKEYANARIC--GAAKWRKPLAKFLRQPHFIVWDNSDLVT 277

Query: 232 VELCGTLKNVVALAAGFVDGL 252
            E+ G LKNV A+ AG V  L
Sbjct: 278 HEVMGGLKNVYAIGAGMVAAL 298


>AT2G41540.2 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 51/261 (19%)

Query: 38  KVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEA-----LPSGEKLTDVINRTN 92
           ++  VG+G WGSV A L+  +      F D+ ++ ++  A       + E L +VIN   
Sbjct: 43  RIVSVGAGAWGSVFAALLQES---YGGFRDKFQIRIWRRAGRAVDRETAEHLFEVINSRE 99

Query: 93  ENVK-------YLPGI--KLGK---------------NVVADP--------DLDNAVRDA 120
           + ++       YL  +  +LG                N+V  P        +L  AV DA
Sbjct: 100 DILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDA 159

Query: 121 NMLVFVTPHQFMEGICKRLVGKIKEGVEA---ISLIKGMEVKMEG-PCMIS--SLISSQL 174
           +++V   P      + + +    KE +     ISL KG+E  +E  P +I+   +I    
Sbjct: 160 DIVVNGLPSTETREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQAT 219

Query: 175 RV---NCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWVQLFSTPYFMVTPVQDVEG 231
            V   N   L G NIA EI  ++++ A +   G  +  +   +    P+F+V    D+  
Sbjct: 220 GVPIDNVLYLGGPNIAAEIYNKEYANARIC--GAAKWRKPLAKFLRQPHFIVWDNSDLVT 277

Query: 232 VELCGTLKNVVALAAGFVDGL 252
            E+ G LKNV A+ AG V  L
Sbjct: 278 HEVMGGLKNVYAIGAGMVAAL 298


>AT2G41540.1 | Symbols: GPDHC1 | GPDHC1; NAD or NADH binding /
           glycerol-3-phosphate dehydrogenase (NAD+) |
           chr2:17326801-17328654 FORWARD
          Length = 462

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 51/261 (19%)

Query: 38  KVTVVGSGNWGSVAAKLIASNTLKLTSFHDEVRMWVFEEA-----LPSGEKLTDVINRTN 92
           ++  VG+G WGSV A L+  +      F D+ ++ ++  A       + E L +VIN   
Sbjct: 43  RIVSVGAGAWGSVFAALLQES---YGGFRDKFQIRIWRRAGRAVDRETAEHLFEVINSRE 99

Query: 93  ENVK-------YLPGI--KLGK---------------NVVADP--------DLDNAVRDA 120
           + ++       YL  +  +LG                N+V  P        +L  AV DA
Sbjct: 100 DILRRLIRRCAYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDA 159

Query: 121 NMLVFVTPHQFMEGICKRLVGKIKEGVEA---ISLIKGMEVKMEG-PCMIS--SLISSQL 174
           +++V   P      + + +    KE +     ISL KG+E  +E  P +I+   +I    
Sbjct: 160 DIVVNGLPSTETREVFEEISKYWKERITVPIIISLSKGIETALEPVPHIITPTKMIHQAT 219

Query: 175 RV---NCCVLMGANIANEIAVEKFSEATVGYKGNREIAEKWVQLFSTPYFMVTPVQDVEG 231
            V   N   L G NIA EI  ++++ A +   G  +  +   +    P+F+V    D+  
Sbjct: 220 GVPIDNVLYLGGPNIAAEIYNKEYANARIC--GAAKWRKPLAKFLRQPHFIVWDNSDLVT 277

Query: 232 VELCGTLKNVVALAAGFVDGL 252
            E+ G LKNV A+ AG V  L
Sbjct: 278 HEVMGGLKNVYAIGAGMVAAL 298