Jatropha Genome Database

JcCB0047491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0047491.10 + phase: 0 /partial
         (153 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03420.1 | Symbols:  | Ku70-binding family protein | chr3:812...   235   7e-63

>AT3G03420.1 | Symbols:  | Ku70-binding family protein |
           chr3:812527-813644 FORWARD
          Length = 194

 Score =  235 bits (600), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 123/153 (80%)

Query: 1   LREHLEKAGCGVEENLIKAINCDXXXXXXXXXXXXXXVCSNHMNIQDEVNQVVIHELIHA 60
           L E +EK+GC V +N +KA+ C               VCSN++ IQDEVNQVVIHELIHA
Sbjct: 42  LMEQMEKSGCRVGDNFVKAVVCTGPVAGGYTKGRGITVCSNYLTIQDEVNQVVIHELIHA 101

Query: 61  YDDCRAKNLDWANCAHHACSEIRASHLSGDCHYKRELLRGYMKMRGHGQECVKRRAMKSV 120
           YD+CRAKNLDW NCAHHACSEIRA HLSGDCH+KRELLRG++K+RGH QEC+KRR +KS+
Sbjct: 102 YDECRAKNLDWTNCAHHACSEIRAGHLSGDCHFKRELLRGFIKLRGHEQECIKRRVLKSL 161

Query: 121 IANPYCSEAAAKDAVEAVWDVCYNDTKPFDRAP 153
             NPYCSE AAKDA+EAVWD CYNDTKPFDRAP
Sbjct: 162 RGNPYCSEVAAKDAMEAVWDTCYNDTKPFDRAP 194