Jatropha Genome Database
- JcCB0045901.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0045901.20 - phase: 2 /partial
(209 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTIN... 75 2e-14
AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACT... 75 2e-14
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTE... 74 5e-14
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTE... 74 5e-14
AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding / transc... 69 1e-12
AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA binding / trans... 69 3e-12
AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin... 67 1e-11
AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interactin... 67 1e-11
AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 65 3e-11
AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 65 3e-11
AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 65 3e-11
AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTIN... 65 3e-11
AT4G28800.1 | Symbols: | transcription factor | chr4:14221970-1... 63 1e-10
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 4e-10
AT2G46970.1 | Symbols: PIL1 | PIL1 (PHYTOCHROME INTERACTING FACT... 61 4e-10
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 61 5e-10
AT4G28815.1 | Symbols: | transcription regulator | chr4:1422871... 59 2e-09
AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 58 3e-09
AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 57 9e-09
AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family p... 56 1e-08
AT4G00050.1 | Symbols: UNE10 | UNE10 (unfertilized embryo sac 10... 56 2e-08
AT4G28811.1 | Symbols: | transcription regulator | chr4:1422533... 56 2e-08
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOC... 54 5e-08
AT3G62090.1 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTIN... 54 6e-08
AT3G62090.2 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTIN... 54 8e-08
AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACT... 52 3e-07
AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACT... 52 3e-07
>AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 5); DNA binding / phytochrome binding /
transcription factor | chr2:8704525-8706237 REVERSE
Length = 407
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 37/39 (94%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IPRCNKSDKASMLDEAIEY+KSLQLQ+Q
Sbjct: 229 INERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQ 267
>AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING FACTOR
3-LIKE 5); DNA binding / phytochrome binding /
transcription factor | chr2:8704525-8706538 REVERSE
Length = 478
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 37/39 (94%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IPRCNKSDKASMLDEAIEY+KSLQLQ+Q
Sbjct: 300 INERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQ 338
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding /
transcription factor/ transcription regulator |
chr1:3077216-3079367 FORWARD
Length = 524
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKMRALQ IP CNK DKASMLDEAIEYLKSLQLQVQ
Sbjct: 359 INEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding /
transcription factor/ transcription regulator |
chr1:3077216-3079367 FORWARD
Length = 524
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKMRALQ IP CNK DKASMLDEAIEYLKSLQLQVQ
Sbjct: 359 INEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQ 397
>AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding /
transcription factor | chr4:17414167-17415945 FORWARD
Length = 373
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 35/39 (89%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQS IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 213 INEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 251
>AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785332-26786338 REVERSE
Length = 210
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ALQ IP NK+DKASMLDEAIEYLK LQLQVQ
Sbjct: 109 INEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 147
>AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 430
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+K+DKAS+LDEAI+YLKSLQLQ+Q
Sbjct: 273 INERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
>AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome interacting
factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 428
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+K+DKAS+LDEAI+YLKSLQLQ+Q
Sbjct: 273 INERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
>AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 442
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+++DKAS+LDEAI+YLKSLQ+Q+Q
Sbjct: 272 INERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+++DKAS+LDEAI+YLKSLQ+Q+Q
Sbjct: 272 INERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+++DKAS+LDEAI+YLKSLQ+Q+Q
Sbjct: 272 INERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 444
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE+M+ALQ IP C+++DKAS+LDEAI+YLKSLQ+Q+Q
Sbjct: 272 INERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ 310
>AT4G28800.1 | Symbols: | transcription factor |
chr4:14221970-14224075 FORWARD
Length = 445
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INEKM+ LQ IPRCNKS K S LD+AIEY+KSLQ Q+Q
Sbjct: 271 INEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQ 309
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14219887 FORWARD
Length = 340
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE M+ALQ +PRC K+D++SMLD+ IEY+KSLQ Q+Q
Sbjct: 293 INEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT2G46970.1 | Symbols: PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR
3-LIKE 1); transcription factor | chr2:19295617-19297678
REVERSE
Length = 416
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
N+KMRALQ +P C K DKAS+LDEAI+Y+++LQLQVQ
Sbjct: 245 FNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQ 283
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14220173 FORWARD
Length = 413
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
INE M+ALQ +PRC K+D++SMLD+ IEY+KSLQ Q+Q
Sbjct: 293 INEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT4G28815.1 | Symbols: | transcription regulator |
chr4:14228719-14230288 FORWARD
Length = 307
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQV 38
INE+M+ LQ IPRCNKS K SML++ IEY+KSL++Q+
Sbjct: 166 INERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQI 203
>AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:10319646-10322177 REVERSE
Length = 350
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M+ALQ +P NK+DKASMLDE I+Y+K LQLQV+
Sbjct: 160 IAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVK 198
>AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23483670-23484889 REVERSE
Length = 297
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M++LQ +P NK+DKASMLDE IEY++ LQLQV+
Sbjct: 121 IAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVK 159
>AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:15079489-15081606 REVERSE
Length = 310
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
I E+M++LQ +P NK+DKASMLDE I+Y+K LQLQV+
Sbjct: 152 IAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVK 190
>AT4G00050.1 | Symbols: UNE10 | UNE10 (unfertilized embryo sac 10);
DNA binding / transcription factor | chr4:17863-19848
FORWARD
Length = 399
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQV 38
IN++M+ LQ +P +K+DKASMLDE IEYLK LQ QV
Sbjct: 229 INQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQV 266
>AT4G28811.1 | Symbols: | transcription regulator |
chr4:14225335-14227840 FORWARD
Length = 544
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 5 MRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
M+ LQ +PRC K+DK SML++ IEY+KSLQLQ+Q
Sbjct: 377 MKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQ 411
>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | HFR1 (LONG
HYPOCOTYL IN FAR-RED); DNA binding / protein binding /
transcription factor | chr1:465933-467685 REVERSE
Length = 292
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
++ KMR LQ +P C+K+DK S+LD+ IEY+K+LQLQ+Q
Sbjct: 150 MSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQ 188
>AT3G62090.1 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 2); protein binding / transcription factor
| chr3:22989097-22990495 REVERSE
Length = 346
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KMR LQ+ +P +K D SMLDEAI Y+ +LQLQVQ
Sbjct: 187 INKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQ 225
>AT3G62090.2 | Symbols: PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 2); protein binding / transcription factor
| chr3:22989097-22990546 REVERSE
Length = 363
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN+KMR LQ+ +P +K D SMLDEAI Y+ +LQLQVQ
Sbjct: 204 INKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQ 242
>AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding /
transcription factor | chr5:24638873-24640031 REVERSE
Length = 278
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN++MR LQ +P +K+DK S+LD+ IE+LK LQ QVQ
Sbjct: 94 INQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQ 132
>AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding /
transcription factor | chr5:24638873-24640439 REVERSE
Length = 366
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 1 INEKMRALQSFIPRCNKSDKASMLDEAIEYLKSLQLQVQ 39
IN++MR LQ +P +K+DK S+LD+ IE+LK LQ QVQ
Sbjct: 182 INQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQ 220