Jatropha Genome Database

JcCB0045901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045901.10 + phase: 1 /partial/short
         (48 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28820.2 | Symbols:  | zinc finger (HIT type) family protein ...    67   2e-12
AT4G28820.1 | Symbols:  | zinc finger (HIT type) family protein ...    67   2e-12

>AT4G28820.2 | Symbols:  | zinc finger (HIT type) family protein |
           chr4:14230815-14232287 REVERSE
          Length = 172

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 1   SSSEIQSALRDESLRKLIRSIDSAADPESELEKAMGVEAFRIFTDKVL 48
           SSSEI+ AL+DE L+KLI SIDS+++P  EL++AMG+EAFR FTDK+L
Sbjct: 115 SSSEIREALKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKIL 162


>AT4G28820.1 | Symbols:  | zinc finger (HIT type) family protein |
           chr4:14230815-14232287 REVERSE
          Length = 173

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 42/48 (87%)

Query: 1   SSSEIQSALRDESLRKLIRSIDSAADPESELEKAMGVEAFRIFTDKVL 48
           SSSEI+ AL+DE L+KLI SIDS+++P  EL++AMG+EAFR FTDK+L
Sbjct: 116 SSSEIREALKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKIL 163