Jatropha Genome Database

JcCB0045481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0045481.10 + phase: 0 
         (152 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43060.1 | Symbols:  | transcription factor | chr2:17909247-1...    70   5e-13

>AT2G43060.1 | Symbols:  | transcription factor |
           chr2:17909247-17909717 FORWARD
          Length = 156

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 8   KTRFARGFLISLSKIRTGNRIGPVSDGEXXXXXXXXXXAAYSSMARAVG-SRRAWSRAFL 66
           K  FA  FL SLS +R  N     +  +          AAY SMARA G S R WSRA L
Sbjct: 15  KDVFAFHFLQSLSNLRKQNPFD--TPDQKNYRVRKIKKAAYVSMARAAGGSSRLWSRALL 72

Query: 67  LKVRNRARFRGILXXXXXXXXXXXXXXXXXXXXXREISKTDMLRKLVPGGAAMDICGLLE 126
            +         I+                           + LR LVPGG  M+   L+E
Sbjct: 73  RRADKDDN--KIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGGGGMETSKLME 130

Query: 127 ETAHYMECLQTQVEVMQNIVDHCSKR 152
           ETAHY++CL  QV+VMQ +VD  S +
Sbjct: 131 ETAHYIKCLSMQVKVMQCLVDGLSPK 156