Jatropha Genome Database

JcCB0042121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0042121.10 + phase: 0 /partial
         (434 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24830.1 | Symbols:  | arginosuccinate synthase family | chr4...   577   e-165
AT4G24830.2 | Symbols:  | arginosuccinate synthase family | chr4...   533   e-152

>AT4G24830.1 | Symbols:  | arginosuccinate synthase family |
           chr4:12793085-12795857 REVERSE
          Length = 494

 Score =  577 bits (1486), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/357 (77%), Positives = 305/357 (85%), Gaps = 1/357 (0%)

Query: 36  KPTISLLRLGAKRSDLQGDELVVNARDIIRTSRSKAIQAVLSSDTEVETHEATKRKGLRG 95
           K T     L  KRS L G+ +V       R+ +++AI+AVLS D    T + +K  GLRG
Sbjct: 36  KTTSQFQELSLKRSQLVGNAVVTGHVTGSRSCKNQAIRAVLSGDGTALTTD-SKEAGLRG 94

Query: 96  HLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQXXXXXXXXXXXXXXSGACQLV 155
            L KVVLAYSGGLDTSVIVPWL+ENYGCEVVCFTADVGQ              SGA QLV
Sbjct: 95  KLKKVVLAYSGGLDTSVIVPWLKENYGCEVVCFTADVGQGIKELEGLEQKAKASGASQLV 154

Query: 156 VKDLQEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTG 215
           VKDL EEFVKD+IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVA EVGADAVAHGCTG
Sbjct: 155 VKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTG 214

Query: 216 KGNDQVRFELTFFALNPELNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRN 275
           KGNDQVRFELTFF+LNPEL VVAPWREW+I+GREDAIEYAKKHNVPVPVTKKSIYSRDRN
Sbjct: 215 KGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAIEYAKKHNVPVPVTKKSIYSRDRN 274

Query: 276 LWHLSHEGDILEDPTNEPKKDMYMMSVDPEDAPNQPEYVEIGIESGIPVSVNGKKLSPAS 335
           LWHLSHEGD+LEDP NEPKKDMYMMSVDPEDAP+QPEY+EIGIESG+PV++NGK LSPA+
Sbjct: 275 LWHLSHEGDLLEDPANEPKKDMYMMSVDPEDAPDQPEYIEIGIESGLPVALNGKALSPAT 334

Query: 336 LLSELNDIGGRHGVGRIDMVENRLVGMKSRGVYETPGGTILYSAARELESLTLDRET 392
           LL+ELN IGG+HG+GRIDMVENRLVGMKSRGVYETPGGTIL++A +ELESLTLDRE+
Sbjct: 335 LLAELNTIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFAAVQELESLTLDRES 391


>AT4G24830.2 | Symbols:  | arginosuccinate synthase family |
           chr4:12793085-12795857 REVERSE
          Length = 450

 Score =  533 bits (1373), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/336 (76%), Positives = 282/336 (83%), Gaps = 1/336 (0%)

Query: 36  KPTISLLRLGAKRSDLQGDELVVNARDIIRTSRSKAIQAVLSSDTEVETHEATKRKGLRG 95
           K T     L  KRS L G+ +V       R+ +++AI+AVLS D    T + +K  GLRG
Sbjct: 36  KTTSQFQELSLKRSQLVGNAVVTGHVTGSRSCKNQAIRAVLSGDGTALTTD-SKEAGLRG 94

Query: 96  HLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQXXXXXXXXXXXXXXSGACQLV 155
            L KVVLAYSGGLDTSVIVPWL+ENYGCEVVCFTADVGQ              SGA QLV
Sbjct: 95  KLKKVVLAYSGGLDTSVIVPWLKENYGCEVVCFTADVGQGIKELEGLEQKAKASGASQLV 154

Query: 156 VKDLQEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTG 215
           VKDL EEFVKD+IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVA EVGADAVAHGCTG
Sbjct: 155 VKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTG 214

Query: 216 KGNDQVRFELTFFALNPELNVVAPWREWDIKGREDAIEYAKKHNVPVPVTKKSIYSRDRN 275
           KGNDQVRFELTFF+LNPEL VVAPWREW+I+GREDAIEYAKKHNVPVPVTKKSIYSRDRN
Sbjct: 215 KGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAIEYAKKHNVPVPVTKKSIYSRDRN 274

Query: 276 LWHLSHEGDILEDPTNEPKKDMYMMSVDPEDAPNQPEYVEIGIESGIPVSVNGKKLSPAS 335
           LWHLSHEGD+LEDP NEPKKDMYMMSVDPEDAP+QPEY+EIGIESG+PV++NGK LSPA+
Sbjct: 275 LWHLSHEGDLLEDPANEPKKDMYMMSVDPEDAPDQPEYIEIGIESGLPVALNGKALSPAT 334

Query: 336 LLSELNDIGGRHGVGRIDMVENRLVGMKSRGVYETP 371
           LL+ELN IGG+HG+GRIDMVENRLVGMKSRG +  P
Sbjct: 335 LLAELNTIGGKHGIGRIDMVENRLVGMKSRGRWFDP 370