Jatropha Genome Database

JcCB0041981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041981.10 + phase: 0 /partial
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE SY...   568   e-162

>AT1G50480.1 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE
           SYNTHETASE); ATP binding / copper ion binding /
           formate-tetrahydrofolate ligase | chr1:18702064-18704687
           FORWARD
          Length = 634

 Score =  568 bits (1464), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/323 (85%), Positives = 287/323 (88%)

Query: 1   MSTSRRKLQVVSPVPADIDIANSVEPFHISEIAKDLNLSPNHYDLYGKYKAKVLLSALDE 60
           MS+S RKL+VVSPVPADIDIANSVEP HISEIAKDLN++P HYDLYGKYKAKVLLSA DE
Sbjct: 1   MSSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDE 60

Query: 61  LEGSPDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKX 120
           L+G  DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA+LDKKVVTCLRQPSQGPTFGIK 
Sbjct: 61  LQGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYLDKKVVTCLRQPSQGPTFGIKG 120

Query: 121 XXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHESSQSDKALFNRLCLP 180
                 YSQVIPMDEFNLHLTGDIH               RIFHE+SQSDKALFNRLC P
Sbjct: 121 GAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPP 180

Query: 181 NKEGKRTFSDIMFRRLKKLGISKTKPEELTAQEIKKFARLDIDPNSITWRRVMDVNDRFL 240
           NKEGKR+FSDIMFRRL KLGISKT PEELT +EIKKFARLDIDP SITWRRVMDVNDRFL
Sbjct: 181 NKEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFL 240

Query: 241 RKITVGQGPEEKGMLRETGFDISVASEIMAVLALTTSLADMRERLGNMVVGNSKAGDPIT 300
           RKIT+GQGPEEKGM RETGFDISVASEIMAVLALTTSL DMRERLG MV+GNSKAGDPIT
Sbjct: 241 RKITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPIT 300

Query: 301 ADDLGVGGALTVLMKDAINPTLM 323
           ADDLGVGGALTVLMKDAINPTLM
Sbjct: 301 ADDLGVGGALTVLMKDAINPTLM 323