Jatropha Genome Database

JcCB0041791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.20 - phase: 0 
         (191 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27290.1 | Symbols:  | unknown protein | chr2:11678586-116797...   161   2e-40

>AT2G27290.1 | Symbols:  | unknown protein | chr2:11678586-11679765
           REVERSE
          Length = 201

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/181 (53%), Positives = 124/181 (68%), Gaps = 11/181 (6%)

Query: 13  AAFSSNKNLNKCCFGSVEARKSSFRSFKARAIKEKTEE-RKN----PQXXXXXXAEEIAK 67
           ++  + +NL    F S  +  +S + F+ RA++EK E+  KN            AEE+ K
Sbjct: 12  SSLLNTRNLQIRFFHS--SVSASSKKFRCRAVREKAEDIDKNISPPSSSPPPPSAEEVTK 69

Query: 68  KYGLEAGLWKIFSTKEEQ----DGEEKKSKGEQAKELLAKYGGAYXXXXXXXXXXXXXXC 123
           KYGLE GLWKI S+K+++    D ++KKSK ++AKELLAKYGGAY              C
Sbjct: 70  KYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAKYGGAYLATSITLSLISFSLC 129

Query: 124 YALISAGIDVQALLQKVGISTDEAGEKVGTFALAYAAHKAASPIRFPPTVALTPVVASWI 183
           Y L+++G+DVQALL KVGIST+E GEKVG FALAYAAHKAASPIRFPPTVALTP+VA+WI
Sbjct: 130 YVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVANWI 189

Query: 184 G 184
           G
Sbjct: 190 G 190