Jatropha Genome Database

JcCB0041791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041791.10 + phase: 0 /pseudo/partial
         (296 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   228   5e-60
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   227   5e-60
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   217   8e-57
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   211   6e-55
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   206   1e-53
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA bindin...   115   5e-26

>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 483

 Score =  228 bits (580), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 125/228 (54%), Positives = 158/228 (69%), Gaps = 22/228 (9%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   + +ERLRDLSE+E NQKWLFVTEEDIKSLP  QN+TLIA+KAPHGTTLEVPDPD
Sbjct: 264 QIR---QTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPD 320

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQ--GVEPPPNYP--SSSGFNENMD 184
           EA D+PQRRYRI+LRSTMGPIDVYLVS+FE KFE+    G  PP   P  SSSG   + D
Sbjct: 321 EAADHPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHD 380

Query: 185 TTMIPGESRGKEIEMQGQDSNRM----CSDLTTSQDFVSGLMKIVPSEVDSD-ADYWLLS 239
              +  ++   E  +   D         SDL   Q+ V G++KI PS+V++D +DYWLLS
Sbjct: 381 IEALTVDN--PETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLS 438

Query: 240 DADVSITDMWRTEPGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEV 287
           +A++S+TD+W+T+ G++W        DYG+A+VSTP P    + P  V
Sbjct: 439 NAEISMTDIWKTDSGIDW--------DYGIADVSTPPPGMGEIAPTAV 478


>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 485

 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 125/228 (54%), Positives = 158/228 (69%), Gaps = 22/228 (9%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   + +ERLRDLSE+E NQKWLFVTEEDIKSLP  QN+TLIA+KAPHGTTLEVPDPD
Sbjct: 266 QIR---QTEERLRDLSENEKNQKWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPD 322

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQ--GVEPPPNYP--SSSGFNENMD 184
           EA D+PQRRYRI+LRSTMGPIDVYLVS+FE KFE+    G  PP   P  SSSG   + D
Sbjct: 323 EAADHPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHD 382

Query: 185 TTMIPGESRGKEIEMQGQDSNRM----CSDLTTSQDFVSGLMKIVPSEVDSD-ADYWLLS 239
              +  ++   E  +   D         SDL   Q+ V G++KI PS+V++D +DYWLLS
Sbjct: 383 IEALTVDN--PETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLS 440

Query: 240 DADVSITDMWRTEPGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEV 287
           +A++S+TD+W+T+ G++W        DYG+A+VSTP P    + P  V
Sbjct: 441 NAEISMTDIWKTDSGIDW--------DYGIADVSTPPPGMGEIAPTAV 480


>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 469

 Score =  217 bits (552), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/232 (55%), Positives = 152/232 (65%), Gaps = 26/232 (11%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   + QERL  LSEDENN++ LFVTE DIK+LP  QN+TLIA+KAPHGTTLEVPDPD
Sbjct: 227 QIR---ESQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPD 283

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEI-QGVEP-------------PPNYP 174
           EA  Y QRRYRI+LRSTMGPIDVYLVSQFEE FE+I Q  EP             P N P
Sbjct: 284 EAGGY-QRRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLP 342

Query: 175 SSSGFNENMDTTMIPGESRGKEIEMQGQ---DSNRMCSDLTTSQDFVSGLMKIVPSEVDS 231
           S+SG  EN D +M P +    E  M+ Q   D+ R+ SD+  S DFV G+MKIVP ++D 
Sbjct: 343 STSGLPENHDVSM-PMKEESTERNMETQEVDDTQRVYSDI-ESHDFVDGIMKIVPPDLDM 400

Query: 232 DADYWLLSD-ADVSITDMWRTEPGVEWNEFGTLQDDYG--MANVSTPQPQTP 280
             DYW  S+  +VSITDMW  E G +WN+  T   D+     N    QPQTP
Sbjct: 401 GVDYWFRSEVGEVSITDMWPDESGPDWNQMITFDQDHAGPSDNKILEQPQTP 452


>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 466

 Score =  211 bits (536), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/232 (55%), Positives = 150/232 (64%), Gaps = 29/232 (12%)

Query: 69  QIRXTNKMQERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPD 128
           QIR   + QERL  LSEDENN++ LFVTE DIK+LP  QN+TLIA+KAPHGTTLEVPDPD
Sbjct: 227 QIR---ESQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPD 283

Query: 129 EAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEI-QGVEP-------------PPNYP 174
           EA  Y QRRYRI+LRSTMGPIDVYLVSQFEE FE+I Q  EP             P N P
Sbjct: 284 EAGGY-QRRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLP 342

Query: 175 SSSGFNENMDTTMIPGESRGKEIEMQGQ---DSNRMCSDLTTSQDFVSGLMKIVPSEVDS 231
           S+SG  EN D +M P +    E  M+ Q   D+ R+ SD+  S DFV G+MKIVP ++D 
Sbjct: 343 STSGLPENHDVSM-PMKEESTERNMETQEVDDTQRVYSDI-ESHDFVDGIMKIVPPDLDM 400

Query: 232 DADYWLLSD-ADVSITDMWRTEPGVEWNEFGTLQDDYG--MANVSTPQPQTP 280
             DYW  S+  +VSITDMW   P   WN+  T   D+     N    QPQTP
Sbjct: 401 GVDYWFRSEVGEVSITDMW---PDEYWNQMITFDQDHAGPSDNKILEQPQTP 449


>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 514

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/226 (50%), Positives = 151/226 (66%), Gaps = 23/226 (10%)

Query: 75  KMQERLRDLSEDE----NNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEA 130
           ++Q  + +L+ +E    N  +WLFVTEEDIKSLP  QN+TLIA+KAPHGTTLEVPDPDEA
Sbjct: 294 QLQAEIENLALEEQALDNQIRWLFVTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEA 353

Query: 131 VDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIQ--GVEPPPNYP--SSSGFNENMDTT 186
            D+PQRRYRI+LRSTMGPIDVYLVS+FE KFE+    G  PP   P  SSSG   + D  
Sbjct: 354 ADHPQRRYRIILRSTMGPIDVYLVSEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIE 413

Query: 187 MIPGESRGKEIEMQGQDSNRM----CSDLTTSQDFVSGLMKIVPSEVDSD-ADYWLLSDA 241
            +  ++   E  +   D         SDL   Q+ V G++KI PS+V++D +DYWLLS+A
Sbjct: 414 ALTVDN--PETAIVSHDHPHPQPGDTSDLNYLQEQVGGMLKITPSDVENDESDYWLLSNA 471

Query: 242 DVSITDMWRTEPGVEWNEFGTLQDDYGMANVSTPQPQTPPLNPAEV 287
           ++S+TD+W+T+ G++W        DYG+A+VSTP P    + P  V
Sbjct: 472 EISMTDIWKTDSGIDW--------DYGIADVSTPPPGMGEIAPTAV 509


>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding /
           protein heterodimerization/ transcription factor |
           chr1:17634937-17637557 FORWARD
          Length = 396

 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 96/173 (55%), Gaps = 39/173 (22%)

Query: 77  QERLRDLSEDENNQKWLFVTEEDIKSLPSLQNETLIAIKAPHGTTLEVPDPDEAVDYPQR 136
           QE LR L ED+  ++++F+TEEDI SLP  QN+TL+AIKAP  + +EVPDPDE + +PQ 
Sbjct: 258 QEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDE-MSFPQ- 315

Query: 137 RYRIVLRSTMGPIDVYLVSQFEEKFEEIQGVEPPPNYPSSSGFNENMDTTMIPGESRGKE 196
           +YR+V+RS MGPIDVYL+S++                                   +G  
Sbjct: 316 QYRMVIRSRMGPIDVYLLSKY-----------------------------------KGDS 340

Query: 197 IEMQGQDSNRMCSDLTTSQDFVSGLMKIVPSEVDSDADYWLLSDADVSITDMW 249
            E   +  N   SD        +  +KIV S+ D  ADYW  SDA+VS+TD+W
Sbjct: 341 AETSDKLGNE--SDQKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLW 391