Jatropha Genome Database
- JcCB0041771.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0041771.10 + phase: 0
(168 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p... 219 8e-58
AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE... 142 1e-34
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au... 142 1e-34
AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au... 140 5e-34
AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq... 137 3e-33
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT... 134 2e-32
AT4G24390.1 | Symbols: | F-box family protein (FBX14) | chr4:12... 134 3e-32
AT4G24390.2 | Symbols: | F-box family protein (FBX14) | chr4:12... 134 3e-32
>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
protein binding / ubiquitin-protein ligase |
chr2:16672848-16675486 REVERSE
Length = 592
Score = 219 bits (557), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 131/164 (79%), Gaps = 1/164 (0%)
Query: 4 ESQDSKLNRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALC 63
E D K ++SC + + DV+ E VM YI DP+DRD+ SLVCRRW+++D+ TR+H+T+ALC
Sbjct: 2 EDPDIKRCKLSCVATVDDVI-EQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC 60
Query: 64 YTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFR 123
YT +PDRL RRF +L SLKLKGKPRAAMFNLIPE+WGG+VTPWV EI+++ LKSVHFR
Sbjct: 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFR 120
Query: 124 RMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
RMIV D DL+ LAK+R L+ LKLDKCSGF+TDGLL + CR
Sbjct: 121 RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164
>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr3:23273479-23276181 REVERSE
Length = 594
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 19 MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
P+ VLE V +I +DR++VSLVC+ WYE++ R+ + I CY SP + RRF +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 79 ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
S++LKGKP A FNL+P+ WGG+V PW+ ++ S+ L+ + +RM+V D LEL+AKS
Sbjct: 69 RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128
Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
+ +VL L C GFSTDGL + CR
Sbjct: 129 F-KNFKVLVLSSCEGFSTDGLAAIAATCR 156
>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
binding / ubiquitin-protein ligase |
chr3:9868342-9870464 FORWARD
Length = 575
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 19 MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
PD V+E V ++ +DR+A+SLVC+ WY+++ +R+ + I CY +P+RL RRF L
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCL 63
Query: 79 ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
+SL LKGKP A FNL+P +WGGFV PW+ +A S L+ + +RM+V D LELL++S
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELLSRS 123
Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCRY 168
+ L L C GF+TDGL + CR+
Sbjct: 124 FVN-FKSLVLVSCEGFTTDGLASIAANCRH 152
>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
binding / ubiquitin-protein ligase |
chr1:4368879-4370780 REVERSE
Length = 577
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 19 MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
PD V+E V ++ +DR+++SLVC+ W++++ +RK + I CY +P+RL RRF L
Sbjct: 4 FPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCL 63
Query: 79 ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
+SL LKGKP A FNL+P +WGGFV PW+ +A S L+ + +RM+V D L+LL++S
Sbjct: 64 KSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARSRVGLEELRLKRMVVTDESLDLLSRS 123
Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCRY 168
+ L L C GF+TDGL + CR+
Sbjct: 124 FAN-FKSLVLVSCEGFTTDGLASIAANCRH 152
>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
ubiquitin-protein ligase | chr5:20334420-20336531
REVERSE
Length = 619
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 97/161 (60%), Gaps = 5/161 (3%)
Query: 11 NRMSCSSGMPD----VVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTT 66
N +S S PD VLE V+ ++D DR+A SLVC+ W+ ++ALTR + I CY
Sbjct: 42 NCISNSQTFPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYAL 101
Query: 67 SPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMI 126
SP RL +RFK + SL LKGKPR A FNL+P DWG PWV+ +A ++ CL+ V +RM
Sbjct: 102 SPARLTQRFKRVRSLVLKGKPRFADFNLMPPDWGANFAPWVSTMAQAYPCLEKVDLKRMF 161
Query: 127 VKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
V D DL LLA S +++ L C GF T G+ V CR
Sbjct: 162 VTDDDLALLADSFPGFKELI-LVCCEGFGTSGISIVANKCR 201
>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr4:1405108-1407057 REVERSE
Length = 585
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 19 MPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHL 78
P VLE ++ +ID DR++VSLVC+ W+E + TRK + + CY SP + RRF +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 79 ESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHFRRMIVKDSDLELLAKS 138
SL LKGKP A +NL+P+ WGG+ PW+ +A L+ + +RM+V D LE +A S
Sbjct: 65 RSLTLKGKPHFADYNLVPDGWGGYAWPWIEAMAAKSSSLEEIRMKRMVVTDECLEKIAAS 124
Query: 139 RGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
+ +VL L C GFSTDG+ + CR
Sbjct: 125 F-KDFKVLVLTSCEGFSTDGIAAIAATCR 152
>AT4G24390.1 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Query: 3 EESQDSKLNRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIAL 62
+S++ K + C + + VLE V+ ++ DR+AVSLVCR WY ++A TR + I
Sbjct: 38 NKSRNFKSSPPPCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGN 97
Query: 63 CYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHF 122
CY+ SP RL RFK + SL LKGKPR A FNL+P +WG +PWV A ++ L+ VH
Sbjct: 98 CYSLSPARLIHRFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHL 157
Query: 123 RRMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
+RM V D DL LLA+S + L L C GF T G+ V CR
Sbjct: 158 KRMFVTDDDLALLAESFPG-FKELTLVCCEGFGTSGIAIVANKCR 201
>AT4G24390.2 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Query: 3 EESQDSKLNRMSCSSGMPDVVLECVMPYIDDPRDRDAVSLVCRRWYELDALTRKHITIAL 62
+S++ K + C + + VLE V+ ++ DR+AVSLVCR WY ++A TR + I
Sbjct: 38 NKSRNFKSSPPPCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGN 97
Query: 63 CYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVNEIADSFDCLKSVHF 122
CY+ SP RL RFK + SL LKGKPR A FNL+P +WG +PWV A ++ L+ VH
Sbjct: 98 CYSLSPARLIHRFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKAYPWLEKVHL 157
Query: 123 RRMIVKDSDLELLAKSRGRVLQVLKLDKCSGFSTDGLLHVGRLCR 167
+RM V D DL LLA+S + L L C GF T G+ V CR
Sbjct: 158 KRMFVTDDDLALLAESFPG-FKELTLVCCEGFGTSGIAIVANKCR 201