Jatropha Genome Database

JcCB0041541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0041541.20 - phase: 2 /pseudo/partial
         (160 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21940.4 | Symbols:  | shikimate kinase, putative | chr2:9351...   202   7e-53
AT2G21940.5 | Symbols:  | shikimate kinase, putative | chr2:9351...   202   8e-53
AT2G21940.2 | Symbols:  | shikimate kinase, putative | chr2:9351...   202   8e-53
AT2G21940.1 | Symbols:  | shikimate kinase, putative | chr2:9351...   202   8e-53
AT4G39540.2 | Symbols:  | shikimate kinase family protein | chr4...   189   6e-49
AT4G39540.1 | Symbols:  | shikimate kinase family protein | chr4...   189   6e-49
AT2G21940.3 | Symbols:  | shikimate kinase, putative | chr2:9351...   151   2e-37
AT3G26900.3 | Symbols:  | shikimate kinase family protein | chr3...    75   3e-14
AT3G26900.2 | Symbols:  | shikimate kinase family protein | chr3...    75   3e-14
AT3G26900.1 | Symbols:  | shikimate kinase family protein | chr3...    75   3e-14

>AT2G21940.4 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 304

 Score =  202 bits (514), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 116/133 (87%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +T+ LKKLS  + VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT+SRP
Sbjct: 163 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRP 222

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+ ESGDAY+ AF+RLSA+ +ERGE Y NAN RVSLENIAAK GY++VS ++PT IAIE
Sbjct: 223 LLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIE 282

Query: 139 ALEQIGNFLEEEE 151
           A EQ+ +FLE+EE
Sbjct: 283 AFEQVLSFLEKEE 295


>AT2G21940.5 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 116/133 (87%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +T+ LKKLS  + VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT+SRP
Sbjct: 162 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+ ESGDAY+ AF+RLSA+ +ERGE Y NAN RVSLENIAAK GY++VS ++PT IAIE
Sbjct: 222 LLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIE 281

Query: 139 ALEQIGNFLEEEE 151
           A EQ+ +FLE+EE
Sbjct: 282 AFEQVLSFLEKEE 294


>AT2G21940.2 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 116/133 (87%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +T+ LKKLS  + VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT+SRP
Sbjct: 162 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+ ESGDAY+ AF+RLSA+ +ERGE Y NAN RVSLENIAAK GY++VS ++PT IAIE
Sbjct: 222 LLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIE 281

Query: 139 ALEQIGNFLEEEE 151
           A EQ+ +FLE+EE
Sbjct: 282 AFEQVLSFLEKEE 294


>AT2G21940.1 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 116/133 (87%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +T+ LKKLS  + VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT+SRP
Sbjct: 162 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIAIE 138
           LL+ ESGDAY+ AF+RLSA+ +ERGE Y NAN RVSLENIAAK GY++VS ++PT IAIE
Sbjct: 222 LLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIE 281

Query: 139 ALEQIGNFLEEEE 151
           A EQ+ +FLE+EE
Sbjct: 282 AFEQVLSFLEKEE 294


>AT4G39540.2 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  189 bits (480), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/138 (67%), Positives = 112/138 (81%), Gaps = 2/138 (1%)

Query: 19  QTEVLKKLSMMHH-VVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESR 77
           +TE LKKLS+M+H VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT SR
Sbjct: 158 ETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSR 217

Query: 78  PLL-NHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIA 136
           PLL + ESGD YT A  RLS + + RGE Y  A+ RVSLENI  KLGYR VS ++P  IA
Sbjct: 218 PLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIA 277

Query: 137 IEALEQIGNFLEEEEGIA 154
           IEA EQ+ ++LE+E+G+A
Sbjct: 278 IEAFEQVQSYLEKEDGMA 295


>AT4G39540.1 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  189 bits (480), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/138 (67%), Positives = 112/138 (81%), Gaps = 2/138 (1%)

Query: 19  QTEVLKKLSMMHH-VVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESR 77
           +TE LKKLS+M+H VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT SR
Sbjct: 158 ETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSR 217

Query: 78  PLL-NHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPTAIA 136
           PLL + ESGD YT A  RLS + + RGE Y  A+ RVSLENI  KLGYR VS ++P  IA
Sbjct: 218 PLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIA 277

Query: 137 IEALEQIGNFLEEEEGIA 154
           IEA EQ+ ++LE+E+G+A
Sbjct: 278 IEAFEQVQSYLEKEDGMA 295


>AT2G21940.3 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352622 FORWARD
          Length = 276

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 83/95 (87%)

Query: 19  QTEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVGTESRP 78
           +T+ LKKLS  + VVVSTGGGAV+RPINW++M KGIS+WLDVPLEALA RIAAVGT+SRP
Sbjct: 162 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRP 221

Query: 79  LLNHESGDAYTKAFRRLSALLEERGEFYANANTRV 113
           LL+ ESGDAY+ AF+RLSA+ +ERGE Y NAN RV
Sbjct: 222 LLHDESGDAYSVAFKRLSAIWDERGEAYTNANARV 256


>AT3G26900.3 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 13/130 (10%)

Query: 17  AFQ---TEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVG 73
           AFQ   TEVLK+LS M  +VV  G GAV    N   +R GIS+W+DVPL+     I A G
Sbjct: 144 AFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLD-----ITAKG 198

Query: 74  TESRPLLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPT 133
            +     +    +   + F  L A  E+  + Y  A+  +SLE IA KL + D+ +++  
Sbjct: 199 DD-----DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSE 253

Query: 134 AIAIEALEQI 143
            IA+E L++I
Sbjct: 254 DIALEILKEI 263


>AT3G26900.2 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 13/130 (10%)

Query: 17  AFQ---TEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVG 73
           AFQ   TEVLK+LS M  +VV  G GAV    N   +R GIS+W+DVPL+     I A G
Sbjct: 144 AFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLD-----ITAKG 198

Query: 74  TESRPLLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPT 133
            +     +    +   + F  L A  E+  + Y  A+  +SLE IA KL + D+ +++  
Sbjct: 199 DD-----DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSE 253

Query: 134 AIAIEALEQI 143
            IA+E L++I
Sbjct: 254 DIALEILKEI 263


>AT3G26900.1 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 13/130 (10%)

Query: 17  AFQ---TEVLKKLSMMHHVVVSTGGGAVVRPINWQHMRKGISVWLDVPLEALAQRIAAVG 73
           AFQ   TEVLK+LS M  +VV  G GAV    N   +R GIS+W+DVPL+     I A G
Sbjct: 144 AFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLD-----ITAKG 198

Query: 74  TESRPLLNHESGDAYTKAFRRLSALLEERGEFYANANTRVSLENIAAKLGYRDVSSISPT 133
            +     +    +   + F  L A  E+  + Y  A+  +SLE IA KL + D+ +++  
Sbjct: 199 DD-----DSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSE 253

Query: 134 AIAIEALEQI 143
            IA+E L++I
Sbjct: 254 DIALEILKEI 263