Jatropha Genome Database

JcCB0040601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040601.20 - phase: 0 
         (270 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25545.1 | Symbols:  | unknown protein | chr3:9277637-9278440...   277   5e-75

>AT3G25545.1 | Symbols:  | unknown protein | chr3:9277637-9278440
           FORWARD
          Length = 267

 Score =  277 bits (709), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/272 (53%), Positives = 189/272 (69%), Gaps = 7/272 (2%)

Query: 1   MEDVLTEIPPPSRFFQEDLXXXXXXXXXXXXXXXXXXXXKPDQPLCPSLLIIALSTPSLY 60
           MEDVLTE PPPSRFFQEDL                    KP+ PL PSLLIIA+S+PSLY
Sbjct: 1   MEDVLTENPPPSRFFQEDLNNFVQPPESLPSPFIIFSNPKPELPLRPSLLIIAISSPSLY 60

Query: 61  VFHHVSSKTLIGSVFIPEIPFSGNSIDPSLRDKSCNIYALNDAD--KLTLLVSIQCSVSA 118
           +FH + SKTL+GS+ +PE+PFSGN+++PSL DKSCNIY+L+ AD   LTLLVS+Q  VS 
Sbjct: 61  IFHSLPSKTLLGSLIMPEVPFSGNTMEPSLEDKSCNIYSLSSADDKNLTLLVSVQLPVSP 120

Query: 119 ERSNVVAKLLIGEQIIPERVLILDSIKIQNFRGKLSSDEACAFKLETSTERKGHTNGCGG 178
           ERSN+V++LLI + IIPERV+ILDSI+ +NFRG+LS DE  A KLETS E+K  T+    
Sbjct: 121 ERSNLVSRLLIAKDIIPERVIILDSIQSRNFRGRLSPDETLAAKLETSAEKKATTHTG-- 178

Query: 179 SSLLKGLDYLPSGSMVDGLAAALLARCQMRNMKGTLCVSWPEHDGSAVALIKSVLQKNVL 238
              L  LDY PSGS++DGL+A+LL+RCQ++N++GTL +SWPE   S +    ++L+K V 
Sbjct: 179 ---LVNLDYFPSGSVIDGLSASLLSRCQLKNIRGTLVISWPEFGPSVIRFAGALLKKIVP 235

Query: 239 HRINLSSNGNAEDKYLWSSRIKDSSFDSELYT 270
                S N + E     +   KD+  DS+LYT
Sbjct: 236 SLDVASVNKDLEKNSSRTGLKKDTWLDSDLYT 267