Jatropha Genome Database

JcCB0040361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0040361.10 + phase: 0 
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45860.1 | Symbols:  | Bet v I allergen family protein | chr5...    51   4e-07

>AT5G45860.1 | Symbols:  | Bet v I allergen family protein |
          chr5:18604101-18604586 REVERSE
          Length = 161

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 36 PGAIANFV---NLQ-GDGGPGTLRQITFVQGGPVSYVKETVDVVDKENFIFDYTIIGGDP 91
          P A   FV   NL  GDGG G++R++T V G P  + +E +D +D E+ +   +IIGGD 
Sbjct: 35 PQAYKQFVKTCNLSSGDGGEGSVREVTVVSGLPAEFSRERLDELDDESHVMMISIIGGDH 94

Query: 92 ALID 95
           L++
Sbjct: 95 RLVN 98