Jatropha Genome Database
- JcCB0039021.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0039021.10 - phase: 0 /partial
(512 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 763 0.0
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 521 e-148
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 510 e-145
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 510 e-144
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 506 e-143
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 505 e-143
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 504 e-143
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 500 e-141
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 499 e-141
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 382 e-106
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 382 e-106
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 382 e-106
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 352 4e-97
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 352 4e-97
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 352 4e-97
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 347 8e-96
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 340 1e-93
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 340 1e-93
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 336 2e-92
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 336 2e-92
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 334 7e-92
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 323 2e-88
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 295 6e-80
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 290 2e-78
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 283 2e-76
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 283 2e-76
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 280 2e-75
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 276 3e-74
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 266 3e-71
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 256 2e-68
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 253 2e-67
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 253 2e-67
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 244 1e-64
AT1G34170.2 | Symbols: ARF13 | transcription factor | chr1:12444... 244 1e-64
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 207 1e-53
AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);... 163 2e-40
AT3G61970.1 | Symbols: NGA2 | NGA2 (NGATHA2); transcription fact... 62 8e-10
AT3G25730.1 | Symbols: | AP2 domain-containing transcription fa... 62 1e-09
AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription ... 61 2e-09
AT1G01030.1 | Symbols: NGA3 | NGA3 (NGATHA3); transcription fact... 61 2e-09
AT1G25560.1 | Symbols: TEM1 | TEM1 (TEMPRANILLO 1); transcriptio... 61 2e-09
AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription fact... 59 5e-09
AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription fact... 59 6e-09
AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF T... 57 2e-08
AT2G36080.1 | Symbols: | DNA-binding protein, putative | chr2:1... 57 4e-08
AT3G11580.1 | Symbols: | DNA-binding protein, putative | chr3:3... 56 5e-08
AT3G11580.2 | Symbols: | DNA-binding protein, putative | chr3:3... 56 6e-08
AT2G36080.2 | Symbols: | DNA-binding protein, putative | chr2:1... 56 6e-08
AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION ... 55 2e-07
AT5G06250.2 | Symbols: | transcription factor | chr5:1892714-18... 54 3e-07
AT5G06250.1 | Symbols: | transcription factor | chr5:1892714-18... 54 3e-07
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);... 52 8e-07
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/526 (73%), Positives = 426/526 (80%), Gaps = 29/526 (5%)
Query: 2 MMGS---VEEKIKAGGLVNG--------AQTNLLEEMKLLKEIQDHSGTRK-TINSELWY 49
MM S VE+K+K LVNG +Q+ LLEEMKLLK D SGTRK INSELW+
Sbjct: 1 MMASLSCVEDKMKTSCLVNGGGTITTTTSQSTLLEEMKLLK---DQSGTRKPVINSELWH 57
Query: 50 ACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNVTLHA 109
ACAGPLV LPQVGSLVYYF QGHSEQVAVST+RSAT+Q+PNYPNLPSQL+CQVHNVTLHA
Sbjct: 58 ACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHA 117
Query: 110 DKDTDEIYAQMSLQPVNSEKDVFPIPDFG-LKPSKHPSEFFCKTLTASDTSTHGGFSVPR 168
DKD+DEIYAQMSLQPV+SE+DVFP+PDFG L+ SKHP+EFFCKTLTASDTSTHGGFSVPR
Sbjct: 118 DKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPR 177
Query: 169 RAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGSKRLK 228
RAAEKLFPPLDY+ QPPTQELVVRDLH+N WTFRHIYRGQPKRHLLTTGWSLFVGSKRL+
Sbjct: 178 RAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLR 237
Query: 229 AGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSPFTIF 288
AGDSVLFIRDEKSQL+VGVRRANRQQT LPSSVLSADSMHIGVL NR+PF IF
Sbjct: 238 AGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIF 297
Query: 289 YNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLR 348
YNPRACP+EFVIPL KYRKAI G+Q+SVGMRFGMMFETE+SGKRRYMGTIVGISDLDPLR
Sbjct: 298 YNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLR 357
Query: 349 WPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHSGMLGGETE 408
WPGSKWRNLQVEWDE GC+DK RVS W+IETPESLFIFPSLTSGLKR LH GETE
Sbjct: 358 WPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTSGLKRQLHPSYFAGETE 417
Query: 409 WSNLIKRPLIWLPEHGNGNFPYSSIPNLYSERLYKMLMKPQ--VNYPGICESALQELCAA 466
W +LIKRPLI +P+ NG PY+S P++ SE+L KM+M+P N P Q +
Sbjct: 418 WGSLIKRPLIRVPDSANGIMPYASFPSMASEQLMKMMMRPHNNQNVPSFMSEMQQNIVMG 477
Query: 467 KATPVDDVKTMQGPINQLNQSVGMSVENQNYSQFCANQSDVINPSA 512
+ D+K MQ P+ +NQ M V+ QN +NPSA
Sbjct: 478 NGGLLGDMK-MQQPL-MMNQKSEM-VQPQNKL--------TVNPSA 512
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/391 (66%), Positives = 306/391 (78%), Gaps = 8/391 (2%)
Query: 36 HSGTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLP 95
+ G +K INS+LW+ACAGPLVSLP VGSLV YFPQGHSEQVA S ++ T IPNYPNLP
Sbjct: 13 NEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ-TDFIPNYPNLP 71
Query: 96 SQLLCQVHNVTLHADKDTDEIYAQMSLQPVNS-EKDVFPIPDFGLKPSKHPSEFFCKTLT 154
S+L+C +H+VTLHAD +TDE+YAQM+LQPVN +++ D GLK ++ P+EFFCKTLT
Sbjct: 72 SKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLT 131
Query: 155 ASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLL 214
ASDTSTHGGFSVPRRAAEK+FPPLD++MQPP QE+V +DLHD WTFRHIYRGQPKRHLL
Sbjct: 132 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLL 191
Query: 215 TTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXX 274
TTGWS+FV +KRL AGDSVLF+RDEKSQL++G+RRANRQ TL SSV+S+DSMHIG+L
Sbjct: 192 TTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAA 251
Query: 275 XXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRY 334
N SPFTIF+NPRA PSEFV+PL KY KA+Y QVS+GMRF MMFETE+ G RRY
Sbjct: 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYA-QVSLGMRFRMMFETEDCGVRRY 310
Query: 335 MGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE---TPESLFIFPSLT 391
MGT+ GISDLDP+RW GS+WRNLQV WDES D+ +RVS WEIE TP +I P
Sbjct: 311 MGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITP--FYICPPPF 368
Query: 392 SGLKRPLHSGMLGGETEWSNLIKRPLIWLPE 422
K P GM E + N KR + W+ E
Sbjct: 369 FRPKYPRQPGMPDDELDMENAFKRAMPWMGE 399
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/393 (63%), Positives = 300/393 (76%), Gaps = 8/393 (2%)
Query: 34 QDHSGTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPN 93
Q H G ++ +NSELW+ACAGPLVSLP VGS V YFPQGHSEQVA ST + + IPNYP+
Sbjct: 11 QPHEGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPS 70
Query: 94 LPSQLLCQVHNVTLHADKDTDEIYAQMSLQPVNSE--KDVFPIPDFGLKPSKHPSEFFCK 151
L QL+CQ+HNVT+HAD +TDE+YAQM+LQP+N++ KD + + G+ PS+ P+ +FCK
Sbjct: 71 LHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV-PSRQPTNYFCK 129
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
TLTASDTSTHGGFSVPRRAAEK+FPPLDY+ QPP QEL+ RDLHDN W FRHI+RGQPKR
Sbjct: 130 TLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKR 189
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGWS+FV +KRL AGDSVLFI ++K+QLL+G+RRANR QT +PSSVLS+DSMH+G+
Sbjct: 190 HLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGL 249
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
L S FTIFYNPRA PSEFVIPL KY KA+Y T+VSVGMRF M+FETEES
Sbjct: 250 LAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSV 309
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPS-L 390
RRYMGTI GI DLDP RW S WR+++V WDES ++Q RVS WEIE + ++PS
Sbjct: 310 RRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPF 369
Query: 391 TSGLKRPLHSGMLG----GETEWSNLIKRPLIW 419
LKRP G+ E + + PL+W
Sbjct: 370 PLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMW 402
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/390 (65%), Positives = 304/390 (77%), Gaps = 14/390 (3%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G R+ INSELW+ACAGPL+SLP GSLV YFPQGHSEQVA S ++ T IP+YPNLPS+
Sbjct: 16 GERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQ-TDFIPSYPNLPSK 74
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNS-EKDVFPIPDFGLKPSKHPSEFFCKTLTAS 156
L+C +HNVTL+AD +TDE+YAQM+LQPVN ++D D GLK ++ P+EFFCKTLTAS
Sbjct: 75 LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134
Query: 157 DTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT 216
DTSTHGGFSVPRRAAEK+FP LD++MQPP QELV +D+HDN WTFRHIYRGQPKRHLLTT
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTT 194
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+FV +KRL AGDSVLFIRD K+QLL+G+RRANRQQ L SSV+S+DSMHIGVL
Sbjct: 195 GWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAA 254
Query: 277 XXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMG 336
N SPFTIFYNPRA P+EFV+PL KY KA+Y QVS+GMRF M+FETEE G RRYMG
Sbjct: 255 HANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY-AQVSLGMRFRMIFETEECGVRRYMG 313
Query: 337 TIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE---TPESLFIFPSLTSG 393
T+ GISDLDP+RW S+WRNLQ+ WDES D+ +RVS W+IE TP +I P
Sbjct: 314 TVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPVLTP--FYICP---PP 368
Query: 394 LKRPLHSGMLG---GETEWSNLIKRPLIWL 420
RP SG G ET+ + +KR + WL
Sbjct: 369 FFRPRFSGQPGMPDDETDMESALKRAMPWL 398
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/390 (63%), Positives = 299/390 (76%), Gaps = 8/390 (2%)
Query: 37 SGTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPS 96
+G ++ +NSELW+ACAGPLVSLP VGS V YFPQGHSEQVA ST + + IPNYP+L
Sbjct: 16 TGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHP 75
Query: 97 QLLCQVHNVTLHADKDTDEIYAQMSLQPVNSE--KDVFPIPDFGLKPSKHPSEFFCKTLT 154
QL+CQ+HNVT+HAD +TDE+YAQM+LQP+N++ KD + + G+ PS+ P+ +FCKTLT
Sbjct: 76 QLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV-PSRQPTNYFCKTLT 134
Query: 155 ASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLL 214
ASDTSTHGGFSVPRRAAEK+FPPLDY+ QPP QEL+ RDLHDN W FRHI+RGQPKRHLL
Sbjct: 135 ASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLL 194
Query: 215 TTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXX 274
TTGWS+FV +KRL AGDSVLFI ++K+QLL+G+RRANR QT +PSSVLS+DSMH+G+L
Sbjct: 195 TTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAA 254
Query: 275 XXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRY 334
S FTIFYNPRA PSEFVIPL KY KA+Y T+VSVGMRF M+FETEES RRY
Sbjct: 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRY 314
Query: 335 MGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPS-LTSG 393
MGTI GI DLDP RW S WR+++V WDES ++Q RVS WEIE + ++PS
Sbjct: 315 MGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLR 374
Query: 394 LKRPLHSGMLG----GETEWSNLIKRPLIW 419
LKRP G+ E + + PL+W
Sbjct: 375 LKRPWPPGLPSFHGLKEDDMGMSMSSPLMW 404
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 505 bits (1300), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/391 (65%), Positives = 304/391 (77%), Gaps = 15/391 (3%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G R+ INSELW+ACAGPL+SLP GSLV YFPQGHSEQVA S ++ T IP+YPNLPS+
Sbjct: 16 GERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQ-TDFIPSYPNLPSK 74
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNS-EKDVFPIPDFGLKPSKHPSEFFCKTLTAS 156
L+C +HNVTL+AD +TDE+YAQM+LQPVN ++D D GLK ++ P+EFFCKTLTAS
Sbjct: 75 LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134
Query: 157 DTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT 216
DTSTHGGFSVPRRAAEK+FP LD++MQPP QELV +D+HDN WTFRHIYRGQPKRHLLTT
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTT 194
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+FV +KRL AGDSVLFIRD K+QLL+G+RRANRQQ L SSV+S+DSMHIGVL
Sbjct: 195 GWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAA 254
Query: 277 XXXXNRSPFTIFYNPR-ACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYM 335
N SPFTIFYNPR A P+EFV+PL KY KA+Y QVS+GMRF M+FETEE G RRYM
Sbjct: 255 HANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMYA-QVSLGMRFRMIFETEECGVRRYM 313
Query: 336 GTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE---TPESLFIFPSLTS 392
GT+ GISDLDP+RW S+WRNLQ+ WDES D+ +RVS W+IE TP +I P
Sbjct: 314 GTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPVLTP--FYICP---P 368
Query: 393 GLKRPLHSGMLG---GETEWSNLIKRPLIWL 420
RP SG G ET+ + +KR + WL
Sbjct: 369 PFFRPRFSGQPGMPDDETDMESALKRAMPWL 399
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/391 (65%), Positives = 304/391 (77%), Gaps = 15/391 (3%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G R+ INSELW+ACAGPL+SLP GSLV YFPQGHSEQVA S ++ T IP+YPNLPS+
Sbjct: 16 GERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQ-TDFIPSYPNLPSK 74
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNS-EKDVFPIPDFGLKPSKHPSEFFCKTLTAS 156
L+C +HNVTL+AD +TDE+YAQM+LQPVN ++D D GLK ++ P+EFFCKTLTAS
Sbjct: 75 LICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTAS 134
Query: 157 DTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT 216
DTSTHGGFSVPRRAAEK+FP LD++MQPP QELV +D+HDN WTFRHIYRGQPKRHLLTT
Sbjct: 135 DTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTT 194
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+FV +KRL AGDSVLFIRD K+QLL+G+RRANRQQ L SSV+S+DSMHIGVL
Sbjct: 195 GWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAA 254
Query: 277 XXXXNRSPFTIFYNPR-ACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYM 335
N SPFTIFYNPR A P+EFV+PL KY KA+Y QVS+GMRF M+FETEE G RRYM
Sbjct: 255 HANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMY-AQVSLGMRFRMIFETEECGVRRYM 313
Query: 336 GTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE---TPESLFIFPSLTS 392
GT+ GISDLDP+RW S+WRNLQ+ WDES D+ +RVS W+IE TP +I P
Sbjct: 314 GTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPVLTP--FYICP---P 368
Query: 393 GLKRPLHSGMLG---GETEWSNLIKRPLIWL 420
RP SG G ET+ + +KR + WL
Sbjct: 369 PFFRPRFSGQPGMPDDETDMESALKRAMPWL 399
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/371 (64%), Positives = 290/371 (78%), Gaps = 5/371 (1%)
Query: 34 QDHSGTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPN 93
Q H G K +NSELW+ACAGPLVSLP GS V YFPQGHSEQVA +T + IPNYP+
Sbjct: 11 QGHEG-EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPS 69
Query: 94 LPSQLLCQVHNVTLHADKDTDEIYAQMSLQPVNSE--KDVFPIPDFGLKPSKHPSEFFCK 151
LP QL+CQ+HNVT+HAD +TDE+YAQM+LQP+ E K+ F + G+ PSK PS +FCK
Sbjct: 70 LPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGI-PSKQPSNYFCK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
TLTASDTSTHGGFSVPRRAAEK+FPPLDYT+QPP QEL+ RDLHD W FRHI+RGQPKR
Sbjct: 129 TLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKR 188
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGWS+FV +KRL AGDSV+FIR+EK+QL +G+R A R QT +PSSVLS+DSMHIG+
Sbjct: 189 HLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGL 248
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
L S FT+F++PRA SEFVI L+KY KA++ T++SVGMRF M+FETEES
Sbjct: 249 LAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSV 308
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPSLT 391
RRYMGTI GISDLD +RWP S WR+++V WDES ++Q RVS WEIE + ++PSL
Sbjct: 309 RRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLF 368
Query: 392 S-GLKRPLHSG 401
LKRP H+G
Sbjct: 369 PLRLKRPWHAG 379
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 499 bits (1285), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/371 (64%), Positives = 290/371 (78%), Gaps = 5/371 (1%)
Query: 34 QDHSGTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPN 93
Q H G K +NSELW+ACAGPLVSLP GS V YFPQGHSEQVA +T + IPNYP+
Sbjct: 11 QGHEG-EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPS 69
Query: 94 LPSQLLCQVHNVTLHADKDTDEIYAQMSLQPVNSE--KDVFPIPDFGLKPSKHPSEFFCK 151
LP QL+CQ+HNVT+HAD +TDE+YAQM+LQP+ E K+ F + G+ PSK PS +FCK
Sbjct: 70 LPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGI-PSKQPSNYFCK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
TLTASDTSTHGGFSVPRRAAEK+FPPLDYT+QPP QEL+ RDLHD W FRHI+RGQPKR
Sbjct: 129 TLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKR 188
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGWS+FV +KRL AGDSV+FIR+EK+QL +G+R A R QT +PSSVLS+DSMHIG+
Sbjct: 189 HLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGL 248
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
L S FT+F++PRA SEFVI L+KY KA++ T++SVGMRF M+FETEES
Sbjct: 249 LAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSV 308
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPSLT 391
RRYMGTI GISDLD +RWP S WR+++V WDES ++Q RVS WEIE + ++PSL
Sbjct: 309 RRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLF 368
Query: 392 S-GLKRPLHSG 401
LKRP H+G
Sbjct: 369 PLRLKRPWHAG 379
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 242/339 (71%), Gaps = 11/339 (3%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV++P+ V+YFPQGH EQV ST ++A Q+P Y +LPS+LLC+V NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 106 TLHADKDTDEIYAQMSLQP-VNSEKDVF----PIPDFGLKPSKHPSEFFCKTLTASDTST 160
L A+ DTDE+YAQ++L P N +++ P+P P + FCKTLTASDTST
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLP----PPPRFQVHSFCKTLTASDTST 175
Query: 161 HGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSL 220
HGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+RGQP+RHLL +GWS+
Sbjct: 176 HGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSV 235
Query: 221 FVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXX 280
FV SKRL AGD+ +F+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVL
Sbjct: 236 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIS 295
Query: 281 NRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVG 340
+ FT++Y PR PSEF++P +Y +++ S+GMRF M FE EE+ ++R+ GTIVG
Sbjct: 296 TGTMFTVYYKPRTSPSEFIVPFDQYMESVKNN-YSIGMRFKMRFEGEEAPEQRFTGTIVG 354
Query: 341 ISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
I + DP RWP SKWR+L+V WDE+ + +RVS W++E
Sbjct: 355 IEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 242/339 (71%), Gaps = 11/339 (3%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV++P+ V+YFPQGH EQV ST ++A Q+P Y +LPS+LLC+V NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 106 TLHADKDTDEIYAQMSLQP-VNSEKDVF----PIPDFGLKPSKHPSEFFCKTLTASDTST 160
L A+ DTDE+YAQ++L P N +++ P+P P + FCKTLTASDTST
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLP----PPPRFQVHSFCKTLTASDTST 175
Query: 161 HGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSL 220
HGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+RGQP+RHLL +GWS+
Sbjct: 176 HGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSV 235
Query: 221 FVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXX 280
FV SKRL AGD+ +F+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVL
Sbjct: 236 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIS 295
Query: 281 NRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVG 340
+ FT++Y PR PSEF++P +Y +++ S+GMRF M FE EE+ ++R+ GTIVG
Sbjct: 296 TGTMFTVYYKPRTSPSEFIVPFDQYMESVKNN-YSIGMRFKMRFEGEEAPEQRFTGTIVG 354
Query: 341 ISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
I + DP RWP SKWR+L+V WDE+ + +RVS W++E
Sbjct: 355 IEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/339 (54%), Positives = 242/339 (71%), Gaps = 11/339 (3%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV++P+ V+YFPQGH EQV ST ++A Q+P Y +LPS+LLC+V NV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 106 TLHADKDTDEIYAQMSLQP-VNSEKDVF----PIPDFGLKPSKHPSEFFCKTLTASDTST 160
L A+ DTDE+YAQ++L P N +++ P+P P + FCKTLTASDTST
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLP----PPPRFQVHSFCKTLTASDTST 175
Query: 161 HGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSL 220
HGGFSV RR A++ PPLD + QPPTQELV +DLH N W FRHI+RGQP+RHLL +GWS+
Sbjct: 176 HGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSV 235
Query: 221 FVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXX 280
FV SKRL AGD+ +F+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVL
Sbjct: 236 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAIS 295
Query: 281 NRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVG 340
+ FT++Y PR PSEF++P +Y +++ S+GMRF M FE EE+ ++R+ GTIVG
Sbjct: 296 TGTMFTVYYKPRTSPSEFIVPFDQYMESVKNN-YSIGMRFKMRFEGEEAPEQRFTGTIVG 354
Query: 341 ISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
I + DP RWP SKWR+L+V WDE+ + +RVS W++E
Sbjct: 355 IEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/335 (51%), Positives = 233/335 (69%), Gaps = 4/335 (1%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV+LP+ G VYYFP+GH EQ+ S + Q+P++ NLPS++LC+V N+
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLK-PSKHPSEFFCKTLTASDTSTHGGF 164
A+ +TDE+YAQ++L P + + PD ++ P K FCKTLTASDTSTHGGF
Sbjct: 81 QRRAEPETDEVYAQITLLPELDQSEPTS-PDAPVQEPEKCTVHSFCKTLTASDTSTHGGF 139
Query: 165 SVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGS 224
SV RR A+ PPLD + QPP QELV DLH++ W FRHI+RGQP+RHLLTTGWS+FV S
Sbjct: 140 SVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSS 199
Query: 225 KRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSP 284
K+L AGD+ +F+R E +L VGVRR RQQT +PSSV+S+ SMHIGVL +
Sbjct: 200 KKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTI 259
Query: 285 FTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDL 344
F++FY PR SEF++ + +Y +A ++SVGMRF M FE EE+ ++R+ GTIVG+ +
Sbjct: 260 FSVFYKPRTSRSEFIVSVNRYLEA-KTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQEN 318
Query: 345 DPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
W S+WR+L+V+WDE + RVS WE+E
Sbjct: 319 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/335 (51%), Positives = 233/335 (69%), Gaps = 4/335 (1%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV+LP+ G VYYFP+GH EQ+ S + Q+P++ NLPS++LC+V N+
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLK-PSKHPSEFFCKTLTASDTSTHGGF 164
A+ +TDE+YAQ++L P + + PD ++ P K FCKTLTASDTSTHGGF
Sbjct: 81 QRRAEPETDEVYAQITLLPELDQSEPTS-PDAPVQEPEKCTVHSFCKTLTASDTSTHGGF 139
Query: 165 SVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGS 224
SV RR A+ PPLD + QPP QELV DLH++ W FRHI+RGQP+RHLLTTGWS+FV S
Sbjct: 140 SVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSS 199
Query: 225 KRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSP 284
K+L AGD+ +F+R E +L VGVRR RQQT +PSSV+S+ SMHIGVL +
Sbjct: 200 KKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTI 259
Query: 285 FTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDL 344
F++FY PR SEF++ + +Y +A ++SVGMRF M FE EE+ ++R+ GTIVG+ +
Sbjct: 260 FSVFYKPRTSRSEFIVSVNRYLEA-KTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQEN 318
Query: 345 DPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
W S+WR+L+V+WDE + RVS WE+E
Sbjct: 319 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 352 bits (902), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/335 (51%), Positives = 233/335 (69%), Gaps = 4/335 (1%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW+ACAGPLV+LP+ G VYYFP+GH EQ+ S + Q+P++ NLPS++LC+V N+
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLK-PSKHPSEFFCKTLTASDTSTHGGF 164
A+ +TDE+YAQ++L P + + PD ++ P K FCKTLTASDTSTHGGF
Sbjct: 81 QRRAEPETDEVYAQITLLPELDQSEPTS-PDAPVQEPEKCTVHSFCKTLTASDTSTHGGF 139
Query: 165 SVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGS 224
SV RR A+ PPLD + QPP QELV DLH++ W FRHI+RGQP+RHLLTTGWS+FV S
Sbjct: 140 SVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSS 199
Query: 225 KRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSP 284
K+L AGD+ +F+R E +L VGVRR RQQT +PSSV+S+ SMHIGVL +
Sbjct: 200 KKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTI 259
Query: 285 FTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDL 344
F++FY PR SEF++ + +Y +A ++SVGMRF M FE EE+ ++R+ GTIVG+ +
Sbjct: 260 FSVFYKPRTSRSEFIVSVNRYLEA-KTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQEN 318
Query: 345 DPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
W S+WR+L+V+WDE + RVS WE+E
Sbjct: 319 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 347 bits (891), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 232/353 (65%), Gaps = 15/353 (4%)
Query: 43 INSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQV 102
I SELW+ACAGPL LP+ G++V YFPQGH EQ A+ S+ +IP + +L Q++C+V
Sbjct: 62 IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAM-VSYSSPLEIPKF-DLNPQIVCRV 119
Query: 103 HNVTLHADKDTDEIYAQMSLQPV------NSE-KDVFPI----PDFGLKPSKHPSEFFCK 151
NV L A+KDTDE+Y Q++L P+ N E K+V + G K FCK
Sbjct: 120 VNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCK 179
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
TLTASDTSTHGGFSVPRRAAE F PLDY Q P+QEL+ +DLH W FRHIYRGQP+R
Sbjct: 180 TLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRR 239
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGWS+FV K L +GD+VLF+RDE +L +G+RRA R + LP S++ +S +
Sbjct: 240 HLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NI 298
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
L +S F +FY+PRA +EFVIP KY +I + V +G RF M FE ++S +
Sbjct: 299 LSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIR-SPVCIGTRFRMRFEMDDSPE 357
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESL 384
RR G + G+ DLDP RWP SKWR L V WDES SD Q RVS WEI+ SL
Sbjct: 358 RRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 410
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/336 (51%), Positives = 227/336 (67%), Gaps = 6/336 (1%)
Query: 45 SELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQ-IPNYPNLPSQLLCQVH 103
+ELW ACAGPLV +P+ G V+YFPQGH EQ+ ST + Q IP + NLP ++LC+V
Sbjct: 41 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVL 99
Query: 104 NVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGG 163
+VTL A+ +TDE+YAQ++LQP + + + ++P+K + F K LTASDTSTHGG
Sbjct: 100 SVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGG 159
Query: 164 FSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVG 223
FSV R+ A + P LD T PTQELV RDLH W F+HI+RGQP+RHLLTTGWS FV
Sbjct: 160 FSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 219
Query: 224 SKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRS 283
SKRL AGD+ +F+R E L VGVRR +QQ+T+P+SV+S+ SM +GVL +
Sbjct: 220 SKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTT 279
Query: 284 PFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISD 343
F +FY PR S+F+I + KY A+ S+GMR+ M FE EES +R + GTI+G D
Sbjct: 280 IFVVFYKPRI--SQFIISVNKYMMAMKNG-FSLGMRYRMRFEGEESPERIFTGTIIGSGD 336
Query: 344 LDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
L +WP SKWR+LQ++WDE + N+VS WEIE
Sbjct: 337 LSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 371
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/336 (51%), Positives = 227/336 (67%), Gaps = 6/336 (1%)
Query: 45 SELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQ-IPNYPNLPSQLLCQVH 103
+ELW ACAGPLV +P+ G V+YFPQGH EQ+ ST + Q IP + NLP ++LC+V
Sbjct: 20 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVL 78
Query: 104 NVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGG 163
+VTL A+ +TDE+YAQ++LQP + + + ++P+K + F K LTASDTSTHGG
Sbjct: 79 SVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVEPAKPTVDSFVKILTASDTSTHGG 138
Query: 164 FSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVG 223
FSV R+ A + P LD T PTQELV RDLH W F+HI+RGQP+RHLLTTGWS FV
Sbjct: 139 FSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVT 198
Query: 224 SKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRS 283
SKRL AGD+ +F+R E L VGVRR +QQ+T+P+SV+S+ SM +GVL +
Sbjct: 199 SKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTT 258
Query: 284 PFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISD 343
F +FY PR S+F+I + KY A+ S+GMR+ M FE EES +R + GTI+G D
Sbjct: 259 IFVVFYKPRI--SQFIISVNKYMMAMKNG-FSLGMRYRMRFEGEESPERIFTGTIIGSGD 315
Query: 344 LDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
L +WP SKWR+LQ++WDE + N+VS WEIE
Sbjct: 316 LSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 350
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 336 bits (862), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/335 (52%), Positives = 225/335 (67%), Gaps = 5/335 (1%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW CAGPLV +PQ VYYFPQGH EQ+ ST++ + + LP ++LC V NV
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPS-EFFCKTLTASDTSTHGGF 164
+L A+KDTDE+YAQ++L PV +E D PD + P F K LTASDTSTHGGF
Sbjct: 72 SLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGF 131
Query: 165 SVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGS 224
SV R+ A + PPLD T Q PTQELV D+H W F+HI+RGQP+RHLLTTGWS FV S
Sbjct: 132 SVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTS 191
Query: 225 KRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSP 284
KRL AGD+ +F+R E +L VGVRRAN QQ+++PSSV+S+ SMH+GVL ++
Sbjct: 192 KRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTM 251
Query: 285 FTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDL 344
F ++Y PR S+F+I L KY +A+ + SVGMRF M FE E+S +RRY GT++G+ D
Sbjct: 252 FIVYYKPRT--SQFIISLNKYLEAM-SNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDC 308
Query: 345 DPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
P W SKWR L+V WDE + N+VS WEIE
Sbjct: 309 SP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIE 342
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 336 bits (862), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/335 (52%), Positives = 225/335 (67%), Gaps = 5/335 (1%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
ELW CAGPLV +PQ VYYFPQGH EQ+ ST++ + + LP ++LC V NV
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPS-EFFCKTLTASDTSTHGGF 164
+L A+KDTDE+YAQ++L PV +E D PD + P F K LTASDTSTHGGF
Sbjct: 72 SLQAEKDTDEVYAQITLIPVGTEVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHGGF 131
Query: 165 SVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGS 224
SV R+ A + PPLD T Q PTQELV D+H W F+HI+RGQP+RHLLTTGWS FV S
Sbjct: 132 SVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTS 191
Query: 225 KRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXNRSP 284
KRL AGD+ +F+R E +L VGVRRAN QQ+++PSSV+S+ SMH+GVL ++
Sbjct: 192 KRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTM 251
Query: 285 FTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDL 344
F ++Y PR S+F+I L KY +A+ + SVGMRF M FE E+S +RRY GT++G+ D
Sbjct: 252 FIVYYKPRT--SQFIISLNKYLEAM-SNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDC 308
Query: 345 DPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
P W SKWR L+V WDE + N+VS WEIE
Sbjct: 309 SP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIE 342
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 334 bits (857), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 172/339 (50%), Positives = 227/339 (66%), Gaps = 8/339 (2%)
Query: 43 INSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQ-IPNYPNLPSQLLCQ 101
+ +ELW CAGPLV +P+ V+YFPQGH EQ+ ST + S+ IP + +LP ++LC+
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVF-DLPPKILCR 80
Query: 102 VHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDTSTH 161
V +VTL A+ +TDE+YAQ++LQP + + + + P+K F K LTASDTSTH
Sbjct: 81 VLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIVGPTKQEFHSFVKILTASDTSTH 140
Query: 162 GGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLF 221
GGFSV R+ A + P LD T PTQELV RDLH W F+HI+RGQP+RHLLTTGWS F
Sbjct: 141 GGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTF 200
Query: 222 VGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXXXN 281
V SKRL AGD+ +F+R E L VGVRR R Q+T+P+SV+S+ SMH+GVL
Sbjct: 201 VSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRT 260
Query: 282 RSPFTIFYNPRACPSEFVIPLTKYRKAI-YGTQVSVGMRFGMMFETEESGKRRYMGTIVG 340
+ F +FY PR S+F++ + KY +AI +G S+G RF M FE EES +R + GTIVG
Sbjct: 261 TTIFVVFYKPRI--SQFIVGVNKYMEAIKHG--FSLGTRFRMRFEGEESPERIFTGTIVG 316
Query: 341 ISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
DL +WP SKWR+LQV+WDE + ++VS WEIE
Sbjct: 317 SGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIE 354
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/367 (48%), Positives = 227/367 (61%), Gaps = 30/367 (8%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYP----NLPSQLLCQ 101
ELW+ACAGPL+SLP+ GSLV YFPQGH EQ P++ LP + C+
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQA------------PDFSAAIYGLPPHVFCR 101
Query: 102 VHNVTLHADKDTDEIYAQMSLQPVNSE-----KDVFPIPDFG------LKPSKHPSEFFC 150
+ +V LHA+ TDE+YAQ+SL P + + ++ D G LK S P FC
Sbjct: 102 ILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTP-HMFC 160
Query: 151 KTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPK 210
KTLTASDTSTHGGFSVPRRAAE FPPLDY+ P+QEL+ RDLH W FRHIYRGQP+
Sbjct: 161 KTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPR 220
Query: 211 RHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIG 270
RHLLTTGWS FV K+L +GD+VLF+R + +L +GVRRA++ + T S +M+
Sbjct: 221 RHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHN 280
Query: 271 VLXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESG 330
S F+I YNP+A S F+IP K+ K + +GMRF E+E++
Sbjct: 281 NFSEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLKVV-DYPFCIGMRFKARVESEDAS 339
Query: 331 KRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIETPESLFIFPS- 389
+RR G I GISDLDP+RWPGSKWR L V WD+ + Q RVS WEIE S+ S
Sbjct: 340 ERRSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSF 399
Query: 390 LTSGLKR 396
+T+G KR
Sbjct: 400 VTTGPKR 406
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 295 bits (754), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 215/342 (62%), Gaps = 8/342 (2%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G VYYFPQG+ E V ST R +++ +LPS+
Sbjct: 19 GSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQAST-REELNELQPICDLPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASD 157
L C+V + L + ++DEIYA+++L P ++ + + +P + F K LTASD
Sbjct: 78 LQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRFRPLVNS---FTKVLTASD 134
Query: 158 TSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTG 217
TS +GGFSVP++ A + PPLD + P QE++ DLHDN W FRH YRG P+RH LTTG
Sbjct: 135 TSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTG 194
Query: 218 WSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXX 277
W+ F+ SK+L GD ++F+R E +L VG+RRA QQ +PSS++S D M GV+
Sbjct: 195 WNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKH 254
Query: 278 XXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGT 337
N+ F + Y PR+ S+F++ K+ A+ + +VG RF M FE ++ +RRY GT
Sbjct: 255 AFDNQCIFIVVYKPRS--SQFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDFSERRYFGT 311
Query: 338 IVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
I+G+SD P W S+WR+L+V+WDE + N+VS WEIE
Sbjct: 312 IIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 352
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 214/348 (61%), Gaps = 20/348 (5%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G VYYFPQGH E V ST R +++ + PS+
Sbjct: 19 GSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEAST-REELNELQPICDFPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCK 151
L C+V + L + ++DE YA+++L P ++ + P+++ ++F F K
Sbjct: 78 LQCRVIAIQLKVENNSDETYAEITLMPDTTQVVI---------PTQNQNQFRPLVNSFTK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
LTASDTS HGGFSVP++ A + PPLD + PTQE++ DLH N W FRHIYRG +R
Sbjct: 129 VLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQR 188
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLT GW+ F SK+L GD ++F+R E +L VG+RRA QQ +PSS++S +SM G+
Sbjct: 189 HLLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGI 248
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
+ N+ F + Y PR+ S+F++ K+ + + +VG RF M FE ++ +
Sbjct: 249 IASAKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDVV-NNKFNVGSRFTMRFEGDDFSE 305
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
RR GTI+G+SD P W S+WR+L+V+WDE + N+VS W+IE
Sbjct: 306 RRSFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIE 352
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 211/340 (62%), Gaps = 15/340 (4%)
Query: 46 ELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLCQVHNV 105
+LW CAGPL +P++G VYYFPQG+ E V ST R +++ +LPS+L C+V +
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEAST-REELNELQPICDLPSKLQCRVIAI 85
Query: 106 TLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCKTLTASDTS 159
L + ++DE YA+++L P + + + + P+++ ++F F K LTASD S
Sbjct: 86 HLKVENNSDETYAKITLMPDTTVSENLQV----VIPTQNENQFRPLVNSFTKVLTASDIS 141
Query: 160 THGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWS 219
+G FSVP++ A + PPLD + P QEL+ DLH N W+FRH YRG P+RHLLTTGW+
Sbjct: 142 ANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWN 201
Query: 220 LFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXXXXX 279
F SK+L GD ++F+R E +L VG+RRA QQ +PSS++S D M GV+
Sbjct: 202 EFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAF 261
Query: 280 XNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIV 339
N+ F + Y PR+ S+F++ K+ A+ + +VG RF M FE ++ +RRY GTI+
Sbjct: 262 DNQCMFIVVYKPRS--SQFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDLSERRYFGTII 318
Query: 340 GISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
G+S+ P W S WR+L+V+WDE + N+VS WEIE
Sbjct: 319 GVSNFSP-HWKCSDWRSLEVQWDEFASFLRPNKVSPWEIE 357
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/348 (41%), Positives = 211/348 (60%), Gaps = 20/348 (5%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G VYYFPQGH E V ST R +++ +LPS+
Sbjct: 19 GSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETST-REELNELQPICDLPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCK 151
L C+V + L + ++DE YA+++L P ++ + P+++ ++F F K
Sbjct: 78 LQCRVIAIHLKVENNSDETYAEITLMPDTTQVVI---------PTQNENQFRPLVNSFTK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
LTASDTS HGGF VP++ A + P LD + P QEL+ DLH N W F H YRG P+R
Sbjct: 129 VLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQR 188
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGW+ F SK+L AGD ++F+R E +L VG+RRA QQ +PSS++S D M GV
Sbjct: 189 HLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGV 248
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
+ N+ FT+ Y PR+ S+F++ K+ A+ + +VG RF M E ++ +
Sbjct: 249 VASAKHAFDNQCMFTVVYKPRS--SKFIVSYDKFLDAV-NNKFNVGSRFTMRLEGDDFSE 305
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
RR GTI+G+SD P W S+WR+L+V+WDE +VS W+IE
Sbjct: 306 RRCFGTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIE 352
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 209/348 (60%), Gaps = 22/348 (6%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G VYYFPQG+ E V ST R +++ +LPS+
Sbjct: 19 GSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDAST-REELNELQPICDLPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCK 151
L C+V + L + ++DE YA+++L P ++ + P++ ++F F K
Sbjct: 78 LQCRVIAIHLKVENNSDETYAEITLMPDTTQVVI---------PTQSENQFRPLVNSFTK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
LTASDTS +GGF VP++ A + PPL P QEL+ +DLH N W FRH YRG P+R
Sbjct: 129 VLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQR 184
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
H LTTGW+ F SK+L GD ++F+R E +L VG+RRA QQ +PSS++S D M GV
Sbjct: 185 HSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGV 244
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
+ N+ F + Y P S+F++ K+ A+ + VG RF M FE ++ +
Sbjct: 245 IASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAM-NNKFIVGSRFTMRFEGDDFSE 303
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
RRY GTI+G++D P W S+WR+L+V+WDE + N+VS WEIE
Sbjct: 304 RRYFGTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 350
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/348 (42%), Positives = 216/348 (62%), Gaps = 22/348 (6%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G +YYFPQG+ E V ST R +++ +LPS+
Sbjct: 19 GSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEAST-REELNELKPICDLPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCK 151
L C+V + L + ++DE YA+++L P ++ + P+++ ++F F K
Sbjct: 78 LQCRVIAIQLKVENNSDETYAEITLMPDTTQVVI---------PTQNENQFRPLVNSFTK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
LTASDTS GGF VP++ A + PPLD + PTQEL+ DLH N W F H YRG P+R
Sbjct: 129 VLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQR 186
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGV 271
HLLTTGW+ F SK+L AGD ++F+R E +L VG+RRA QQ +PSS++S +SM GV
Sbjct: 187 HLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGV 246
Query: 272 LXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGK 331
+ N+ F + Y PR+ S+F++ K+ A+ + +VG RF M FE ++ +
Sbjct: 247 IASAKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDAV-NNKFNVGSRFTMRFEGDDFSE 303
Query: 332 RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
RRY GTI+G+SD P W S+WRNL+V+WDE + N+VS WEIE
Sbjct: 304 RRYFGTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIE 350
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 203/343 (59%), Gaps = 10/343 (2%)
Query: 39 TRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQL 98
T+ + +LW CAGPL LP+ G VYYFPQGH E + ST R I +LPS+L
Sbjct: 18 TKTYMYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENST-RDELDHIRPIFDLPSKL 76
Query: 99 LCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDT 158
C+V + DK+TDE+YAQ+SL P +E +P + FF K LTASD
Sbjct: 77 RCRVVAIDRKVDKNTDEVYAQISLMPDTTEVMTHNTTMDTRRPIVY---FFSKILTASDV 133
Query: 159 STHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT-- 216
S GG +P++ A + FPPLD + TQ LV +DL+ W+F+H++RG P+RH+ T+
Sbjct: 134 SLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGG 193
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+F +KRL GD + +R E +L G+RRA QQ +PSSV+SA+ M GV+
Sbjct: 194 GWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVV 253
Query: 277 XXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMG 336
+ F + Y P + S+FVI K+ A+ + VG RF M FE ++ ++RY G
Sbjct: 254 NAFKTKCMFNVVYKPSS--SQFVISYDKFVDAMNNNYI-VGSRFRMQFEGKDFSEKRYDG 310
Query: 337 TIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
TI+G++D+ P W S+WR+L+V+WDE + N+VS W+IE
Sbjct: 311 TIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIE 352
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/418 (37%), Positives = 216/418 (51%), Gaps = 55/418 (13%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
GT K ++ +LW+ACAG +V +P + S V+YFPQGH+E N P +P
Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCV------DFGNLP-IPPM 63
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEK-------DVFPIPDFGLKPSKHPSEFFC 150
+LC+V + AD ++DE++A++ L P+ ++ D F K PS F
Sbjct: 64 VLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPS--FA 121
Query: 151 KTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPK 210
KTLT SD + GGFSVPR AE +FP LDY +PP Q ++ +D+H ++W FRHIYRG P+
Sbjct: 122 KTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPR 181
Query: 211 RHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANR----------------QQ 254
RHLLTTGWS FV K+L AGDS++F+R E L VG+RRA R
Sbjct: 182 RHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGG 241
Query: 255 TTLPSSVLSADSMHI------------------GVLXXXXXXXXNRSPFTIFYNPRACPS 296
+ SS+L D + V+ R PF + Y PRA S
Sbjct: 242 SCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAISGR-PFEVVYYPRASTS 300
Query: 297 EFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRR-YMGTIVGISDLDPLRWPGSKWR 355
EF + R A+ S GMRF M FETE+S + +MGT+ ++ DP+RWP S WR
Sbjct: 301 EFCVKALDARAAMRIPWCS-GMRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWR 359
Query: 356 NLQVEWDESGCSDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHSGMLGGETEWSNLI 413
LQV WDE RV+ W +E ++ P LTS P L +++NLI
Sbjct: 360 LLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIP-LTS-FSPPRKKMRLPQHPDYNNLI 415
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 163/241 (67%), Gaps = 4/241 (1%)
Query: 139 LKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNI 198
++P+K + F K LTASDTSTHGGFSV R+ A + P LD T PTQELV RDLH
Sbjct: 27 VEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYE 86
Query: 199 WTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLP 258
W F+HI+RGQP+RHLLTTGWS FV SKRL AGD+ +F+R E L VGVRR +QQ+T+P
Sbjct: 87 WRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMP 146
Query: 259 SSVLSADSMHIGVLXXXXXXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGM 318
+SV+S+ SM +GVL + F +FY PR S+F+I + KY A+ S+GM
Sbjct: 147 ASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI--SQFIISVNKYMMAMKNG-FSLGM 203
Query: 319 RFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEI 378
R+ M FE EES +R + GTI+G DL +WP SKWR+LQ++WDE + N+VS WEI
Sbjct: 204 RYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEI 262
Query: 379 E 379
E
Sbjct: 263 E 263
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 199/385 (51%), Gaps = 54/385 (14%)
Query: 41 KTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQLLC 100
K+++ +LW+ACAG +V +P + S V+YF QGH+E A P +P +LC
Sbjct: 5 KSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHA-------PRVPPLILC 57
Query: 101 QVHNVTLHADKDTDEIYAQMSLQPV-NSEKDVFPIPDFGLKP--------SKHPSEFFCK 151
+V +V AD +TDE++A+++L P+ ++ D+ GL P K F K
Sbjct: 58 RVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAK 117
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
TLT SD + GGFSVPR AE +FP LDY+ +PP Q ++ +D+H W FRHIYRG P+R
Sbjct: 118 TLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRR 177
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANR------------------- 252
HLLTTGWS FV K+L AGDS++F+R E L VG+RRA R
Sbjct: 178 HLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGF 237
Query: 253 ----QQTTLPSSVL--------SADSMHIGVLXXXXXXXXNRS-----PFTIFYNPRACP 295
+ TT S ++ ++ G + F + Y PRA
Sbjct: 238 LRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAST 297
Query: 296 SEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRR-YMGTIVGISDLDPLRWPGSKW 354
EF + R A+ S GMRF M FETE+S + +MGT+ + DP+RWP S W
Sbjct: 298 PEFCVKAADVRSAMRIRWCS-GMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPW 356
Query: 355 RNLQVEWDESGCSDKQNRVSSWEIE 379
R LQV WDE RVS W +E
Sbjct: 357 RLLQVAWDEPDLLQNVKRVSPWLVE 381
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 189/343 (55%), Gaps = 36/343 (10%)
Query: 39 TRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQL 98
T+ + +LW CAGPL LP+ G VYYFPQGH E + ST R I +LPS+L
Sbjct: 18 TKTYMYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENST-RDELDHIRPIFDLPSKL 76
Query: 99 LCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDT 158
C+V + DK+TDE+YAQ+SL P +E +P + FF K LTASD
Sbjct: 77 RCRVVAIDRKVDKNTDEVYAQISLMPDTTEVMTHNTTMDTRRPIVY---FFSKILTASDV 133
Query: 159 STHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT-- 216
S GG +P++ A + FPPLD + TQ LV +DL+ W+F+H++RG P+RH+ T+
Sbjct: 134 SLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGG 193
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+F +KRL GD + +R E +L G+RRA QQ +PSSV+SA+ M GV+
Sbjct: 194 GWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVV 253
Query: 277 XXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMG 336
+ F + Y PR M FE ++ ++RY G
Sbjct: 254 NAFKTKCMFNVVYKPR-----------------------------MQFEGKDFSEKRYDG 284
Query: 337 TIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
TI+G++D+ P W S+WR+L+V+WDE + N+VS W+IE
Sbjct: 285 TIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIE 326
>AT1G34170.2 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 479
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 189/343 (55%), Gaps = 36/343 (10%)
Query: 39 TRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQL 98
T+ + +LW CAGPL LP+ G VYYFPQGH E + ST R I +LPS+L
Sbjct: 18 TKTYMYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENST-RDELDHIRPIFDLPSKL 76
Query: 99 LCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEFFCKTLTASDT 158
C+V + DK+TDE+YAQ+SL P +E +P + FF K LTASD
Sbjct: 77 RCRVVAIDRKVDKNTDEVYAQISLMPDTTEVMTHNTTMDTRRPIVY---FFSKILTASDV 133
Query: 159 STHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTT-- 216
S GG +P++ A + FPPLD + TQ LV +DL+ W+F+H++RG P+RH+ T+
Sbjct: 134 SLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGG 193
Query: 217 GWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLXXXX 276
GWS+F +KRL GD + +R E +L G+RRA QQ +PSSV+SA+ M GV+
Sbjct: 194 GWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVV 253
Query: 277 XXXXNRSPFTIFYNPRACPSEFVIPLTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMG 336
+ F + Y PR M FE ++ ++RY G
Sbjct: 254 NAFKTKCMFNVVYKPR-----------------------------MQFEGKDFSEKRYDG 284
Query: 337 TIVGISDLDPLRWPGSKWRNLQVEWDESGCSDKQNRVSSWEIE 379
TI+G++D+ P W S+WR+L+V+WDE + N+VS W+IE
Sbjct: 285 TIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIE 326
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 188/378 (49%), Gaps = 51/378 (13%)
Query: 40 RKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVA--VSTKRSATSQIPNYPNLPSQ 97
+ ++ +W ACAG V +P + S VYYFPQGH E +ST S+TS +P
Sbjct: 13 HREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPVP-------- 64
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDF-------GLKPSKHPSEFFC 150
C + ++ L AD TDE++A + LQP+ ++ F ++ G + F
Sbjct: 65 --CIITSIQLLADPVTDEVFAHLILQPMTQQQ--FTPTNYSRFGRFDGDVDDNNKVTTFA 120
Query: 151 KTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPK 210
K LT SD + GGFSVPR A+ +FP L++ + PP Q+L V D+H +W FRHIYRG P+
Sbjct: 121 KILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPR 180
Query: 211 RHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVRRANRQQTTLP------------ 258
RHLLTTGWS FV SK+L AGDSV+F+R ++ +GVRR +
Sbjct: 181 RHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRRTPISSSDGGSSYYGGDEYNGY 240
Query: 259 ---SSVLSAD----------SMHIGVLXXXXXXXXNRS----PFTIFYNPRACPSEFVIP 301
SSV D S + + NR+ PF + + P A SEFV+
Sbjct: 241 YSQSSVAKEDDGSPKKTFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVR 300
Query: 302 LTKYRKAIYGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEW 361
++ + G R M ETE+S + + IV + + W GS W+ LQ+ W
Sbjct: 301 AEDVESSM-SMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQETGPWRGSPWKQLQITW 359
Query: 362 DESGCSDKQNRVSSWEIE 379
DE RV+ W++E
Sbjct: 360 DEPEILQNVKRVNPWQVE 377
>AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);
transcription factor | chr1:16672582-16673952 REVERSE
Length = 222
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 19/217 (8%)
Query: 38 GTRKTINSELWYACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRSATSQIPNYPNLPSQ 97
G++ + +LW CAGPL +P++G VYYFPQGH E V ST+ PN +LPS+
Sbjct: 19 GSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPSK 77
Query: 98 LLCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDVFPIPDFGLKPSKHPSEF------FCK 151
L C+V + L + ++DE Y +++L P ++ + P+++ ++F F K
Sbjct: 78 LQCRVIAIHLKVENNSDETYVEITLMPDTTQVVI---------PTENENQFRPIVNSFTK 128
Query: 152 TLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKR 211
LTASDTS G FSVP + A + PPLD + P QEL+ DLH N W F+H YR P+
Sbjct: 129 VLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRG 187
Query: 212 HLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLLVGVR 248
TTGW+ F SK+L GD ++F R E +L VG+R
Sbjct: 188 D--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>AT3G61970.1 | Symbols: NGA2 | NGA2 (NGATHA2); transcription factor
| chr3:22951829-22952728 FORWARD
Length = 299
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 149 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVV--RDLHDNIWTFRHIYR 206
F K +T SD +P++ AE+ FP + T + L++ D N W FR+ Y
Sbjct: 23 FDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSYW 82
Query: 207 GQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRD--EKSQLLVGVRR 249
+ +++T GWS FV K+L AGD V F RD K +L + RR
Sbjct: 83 NSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRR 127
>AT3G25730.1 | Symbols: | AP2 domain-containing transcription
factor, putative | chr3:9396505-9397506 FORWARD
Length = 333
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFP-PL-DYTMQPPTQELVVRDLHDNIWTFRHIY 205
F KT+T SD +P+ AEK FP PL + + L D++ +W FR+ Y
Sbjct: 182 LFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSY 241
Query: 206 RGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR--DEKSQLLVG 246
+ ++LT GWS FV KRL AGD + F R D+ + +G
Sbjct: 242 WNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIG 284
>AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription
factor/ transcription repressor | chr1:4542386-4543420
FORWARD
Length = 344
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRG 207
F K +T SD +P+ AEK FP + L D++ +W FR+ Y
Sbjct: 187 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 246
Query: 208 QPKRHLLTTGWSLFVGSKRLKAGDSVLFIRD--EKSQLLVG 246
+ ++LT GWS FV K L+AGD V F R + QL +G
Sbjct: 247 SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>AT1G01030.1 | Symbols: NGA3 | NGA3 (NGATHA3); transcription factor
| chr1:11864-12940 REVERSE
Length = 358
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 141 PSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWT 200
P F K +T SD +P++ AE+ FP LD + L +D + +W
Sbjct: 48 PPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWR 106
Query: 201 FRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR-----DEKSQLLVGVR 248
FR+ Y + +++T GWS FV K+L AGD V F R E+S+L + R
Sbjct: 107 FRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWR 159
>AT1G25560.1 | Symbols: TEM1 | TEM1 (TEMPRANILLO 1); transcription
factor | chr1:8981891-8982976 REVERSE
Length = 361
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYT----MQPPTQELVVRDLHD---NIWT 200
F KT+T SD +P++ AEK FP T M P + V+ +L D +W
Sbjct: 194 LFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWR 253
Query: 201 FRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR 237
FR+ Y + ++LT GWS FV K L+AGD V F R
Sbjct: 254 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFER 290
>AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription factor
| chr2:19261313-19262245 FORWARD
Length = 310
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 116 IYAQMSLQPVNSEKDVFPIPDF-GLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKL 174
+ +SL E++ P+ + G + F K +T SD +P++ AE+
Sbjct: 1 MMTDLSLTRDEDEEEAKPLAEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERF 60
Query: 175 FPPLDYTMQPPTQELVVRDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVL 234
FP LD + L DL W FR+ Y + +++T GWS FV K+L AGD V
Sbjct: 61 FP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVS 119
Query: 235 FIR-----DEKSQLLVGVRR 249
F R S+L + RR
Sbjct: 120 FQRCVGDSGRDSRLFIDWRR 139
>AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription factor
| chr4:639791-640792 FORWARD
Length = 333
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 142 SKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDN---I 198
S+ F K LT SD +P++ AE FP D Q V D D +
Sbjct: 29 SERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED------NQNGTVLDFQDKNGKM 82
Query: 199 WTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR 237
W FR+ Y + +++T GWS FV K+L AGD+V F R
Sbjct: 83 WRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYR 121
>AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF THE
ATPASE OF THE VACUOLAR MEMBRANE); DNA binding /
transcription factor/ transcription repressor |
chr1:25880442-25881500 FORWARD
Length = 352
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVV--RDLHDNIWTFRHIY 205
F K +T SD +P++ AEK FP L T+ +++ D++ +W FR+ Y
Sbjct: 187 LFEKAVTPSDVGKLNRLVIPKQHAEKHFP-LPSPSPAVTKGVLINFEDVNGKVWRFRYSY 245
Query: 206 RGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR 237
+ ++LT GWS FV K L+AGD V F R
Sbjct: 246 WNSSQSYVLTKGWSRFVKEKNLRAGDVVTFER 277
>AT2G36080.1 | Symbols: | DNA-binding protein, putative |
chr2:15148612-15151411 REVERSE
Length = 244
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 149 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVV--RDLHDNIWTFRHIYR 206
F K LT SD +P++ AE+ FP + L++ D W FR+ Y
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 207 GQPKRHLLTTGWSLFVGSKRLKAGDSVLF--IRDEKSQLLVGVRR 249
+ ++LT GWS +V K L AGD VLF R + + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>AT3G11580.1 | Symbols: | DNA-binding protein, putative |
chr3:3649165-3651271 REVERSE
Length = 267
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPL----------DYTMQPPTQELVVRDLHDN 197
F K+LT SD +P++ AEK FP D L D
Sbjct: 28 LFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGK 87
Query: 198 IWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRD--EKSQLLVGVRR 249
W FR+ Y + ++LT GWS +V K L AGD V F R + +L +G RR
Sbjct: 88 CWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRR 141
>AT3G11580.2 | Symbols: | DNA-binding protein, putative |
chr3:3650579-3651271 REVERSE
Length = 230
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 149 FCKTLTASDTSTHGGFSVPRRAAEKLFPPL----------DYTMQPPTQELVVRDLHDNI 198
F K+LT SD +P++ AEK FP D L D
Sbjct: 29 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKC 88
Query: 199 WTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRD--EKSQLLVGVRR 249
W FR+ Y + ++LT GWS +V K L AGD V F R + +L +G RR
Sbjct: 89 WKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRR 141
>AT2G36080.2 | Symbols: | DNA-binding protein, putative |
chr2:15150890-15151411 REVERSE
Length = 173
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 149 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVV--RDLHDNIWTFRHIYR 206
F K LT SD +P++ AE+ FP + L++ D W FR+ Y
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 207 GQPKRHLLTTGWSLFVGSKRLKAGDSVLF--IRDEKSQLLVGVRR 249
+ ++LT GWS +V K L AGD VLF R + + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF
SUGAR-INDUCIBLE GENE 2); transcription factor/
transcription repressor | chr2:12980904-12984724 REVERSE
Length = 790
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFRHIY-R 206
F KTL+ASD G +P+ AE FPP+ + P L ++D+ WTF+ Y
Sbjct: 294 LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIP---LKIQDVRGREWTFQFRYWP 350
Query: 207 GQPKRHLLTTGWSLFVGSKRLKAGDSVLFIR-DEKSQLLVGVRRA----NRQQTTLPSSV 261
R + G + + S L+AGD+V F R D +L++G R+A + Q L +
Sbjct: 351 NNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGT 410
Query: 262 LSADSMHIGV 271
+ D+ GV
Sbjct: 411 STEDTSSSGV 420
>AT5G06250.2 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQE----------LVVRDLHDN 197
F K+LT SD +P++ AEK FP L+ + L D
Sbjct: 45 LFEKSLTPSDVGKLNRLVIPKQHAEKYFP-LNAVLVSSAAADTSSSEKGMLLSFEDESGK 103
Query: 198 IWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLF--IRDEKSQLLVGVRRANRQQT 255
W FR+ Y + ++LT GWS FV K+L GD V F R + +L +G RR + +
Sbjct: 104 SWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSS 163
Query: 256 TLPSSVLSA 264
+ ++ SA
Sbjct: 164 SSVAATNSA 172
>AT5G06250.1 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 267
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFP---------PLDYTMQPPTQELVVRDLHDNI 198
F K+LT SD +P++ AEK FP D + L D
Sbjct: 45 LFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKS 104
Query: 199 WTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLF--IRDEKSQLLVGVRRANRQQTT 256
W FR+ Y + ++LT GWS FV K+L GD V F R + +L +G RR + ++
Sbjct: 105 WRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQGSSS 164
Query: 257 LPSSVLSA 264
++ SA
Sbjct: 165 SVAATNSA 172
>AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);
transcription factor | chr4:15481231-15484897 FORWARD
Length = 780
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 148 FFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNIWTFR-HIYR 206
F K L+ASD G +P+ AE FPP+ P L ++D+ W F+ +
Sbjct: 285 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISL---PEGLPLKIQDIKGKEWVFQFRFWP 341
Query: 207 GQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDE-KSQLLVGVRRANRQQTT 256
R + G + + S +L+AGD+V F R E + +L++G R+A T
Sbjct: 342 NNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTAT 392