Jatropha Genome Database

JcCB0037361.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037361.10 - phase: 0 /partial
         (240 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39870.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   203   1e-52
AT2G05590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    65   4e-11
AT2G05590.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    65   5e-11

>AT4G39870.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins
           in 220 species: Archae - 0; Bacteria - 39; Metazoa -
           1002; Fungi - 279; Plants - 129; Viruses - 34; Other
           Eukaryotes - 535 (source: NCBI BLink). |
           chr4:18502234-18504275 FORWARD
          Length = 394

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 159/265 (60%), Gaps = 29/265 (10%)

Query: 1   MGKAKSFRSKAVHFVSDLTTVFLNPISDXXXXXXXXXXXVTEDLSESKRSQLQSITEEDT 60
           MGK KSFRSKAVHFV+DLT   LNPISD             E+  ESKR+QL+S T E  
Sbjct: 1   MGKHKSFRSKAVHFVTDLTAGLLNPISDKPSSAHPPPPLPDEE-DESKRNQLESTTAEQP 59

Query: 61  GDLADGPDTSSFTAF-------------XXXXXXXXXXGVNSNADEKNDSVAEIVDQPSD 107
            DL D PDTSSF+AF                             ++     ++     ++
Sbjct: 60  KDLVDEPDTSSFSAFLGSLLSSDPKDKRKDQDPEDEEDEEEDEEEDSEAETSDTSSSSAN 119

Query: 108 STR--KESST----KKSLLSRGKQSLRAIYQAARIGGYRGQEQKFESDMKYTDESDDNFD 161
            TR  KE+++    KKS LS+ KQ  R  YQA +  G +  E+K  SD+   DE  + +D
Sbjct: 120 PTRTMKETTSGGAAKKSFLSKYKQHFRNFYQAVKFPGVK--ERKGNSDVIPDDEETEYYD 177

Query: 162 GLEMKHMQN------VEQAVEARELPDVSEPSLLLSEKARNALYASLPALVQGRKWLLLY 215
           GLEMK MQN      V   V+A  +P++SEPSLLLSE++R +LY SLPALVQGRKW+LLY
Sbjct: 178 GLEMKPMQNNNVKEEVTVVVQAI-IPEISEPSLLLSEQSRRSLYTSLPALVQGRKWILLY 236

Query: 216 STWRHGISLATLYRRSMLWPGLSLL 240
           STWRHGISL+TLYR+S+LWPGLSLL
Sbjct: 237 STWRHGISLSTLYRKSLLWPGLSLL 261


>AT2G05590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins
           in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307;
           Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes -
           105 (source: NCBI BLink). | chr2:2067196-2068650 FORWARD
          Length = 263

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 14/90 (15%)

Query: 151 KYTDESDDNFDGLEMKHMQNVEQAVEARELPDVSEPSLLLSEKARNALYASLPALVQGRK 210
           K  +  +D FDG++           + REL   +E S+ ++      L+ASLP +V+G K
Sbjct: 110 KVEESGNDYFDGVK-----------KMREL---TESSVFITANLFEFLHASLPNIVRGCK 155

Query: 211 WLLLYSTWRHGISLATLYRRSMLWPGLSLL 240
           W+LLYST +HGISL TL RRS   PG  LL
Sbjct: 156 WILLYSTLKHGISLRTLLRRSGELPGPCLL 185


>AT2G05590.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins
           in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403;
           Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes -
           144 (source: NCBI BLink). | chr2:2067196-2068951 FORWARD
          Length = 303

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 14/90 (15%)

Query: 151 KYTDESDDNFDGLEMKHMQNVEQAVEARELPDVSEPSLLLSEKARNALYASLPALVQGRK 210
           K  +  +D FDG+              +++ +++E S+ ++      L+ASLP +V+G K
Sbjct: 110 KVEESGNDYFDGV--------------KKMRELTESSVFITANLFEFLHASLPNIVRGCK 155

Query: 211 WLLLYSTWRHGISLATLYRRSMLWPGLSLL 240
           W+LLYST +HGISL TL RRS   PG  LL
Sbjct: 156 WILLYSTLKHGISLRTLLRRSGELPGPCLL 185