Jatropha Genome Database

JcCB0037201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0037201.10 - phase: 2 /pseudo/partial
         (187 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52940.1 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-ste...   124   3e-29
AT3G52940.2 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-ste...    89   1e-18

>AT3G52940.1 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-sterol
           reductase | chr3:19630369-19633112 REVERSE
          Length = 369

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 72/101 (71%), Gaps = 15/101 (14%)

Query: 27  LYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQACSYEPDLGWWLLGNKV 86
           LYILDYF +EEYMTSTWDIIAERLGFMLVFGDL+WIPFTFSIQ        GWWLL NKV
Sbjct: 186 LYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLLWIPFTFSIQ--------GWWLLHNKV 237

Query: 87  ELTMAAVIANCFVFLIGL-------TSKSMFSKRIQKPSYG 120
           ELT+ A++ NC VFLIG          K +F K  + P +G
Sbjct: 238 ELTVPAIVVNCLVFLIGYMVFRGANKQKHIFKKNPKTPIWG 278


>AT3G52940.2 | Symbols: FK, HYD2, ELL1 | FK (FACKEL); delta14-sterol
           reductase | chr3:19631030-19633112 REVERSE
          Length = 262

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 27  LYILDYFFYEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQA 70
           LYILDYF +EEYMTSTWDIIAERLGFMLVFGDL+WIPFTFSIQA
Sbjct: 186 LYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLLWIPFTFSIQA 229