Jatropha Genome Database

JcCB0036911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036911.10 + phase: 0 /TE/partial
         (268 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    81   5e-16
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    58   7e-09
AT2G13980.1 | Symbols:  | nucleic acid binding | chr2:5869853-58...    56   2e-08
AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...    54   1e-07
AT3G25270.1 | Symbols:  | nucleic acid binding | chr3:9203934-92...    54   1e-07
AT2G34320.1 | Symbols:  | nucleic acid binding | chr2:14484959-1...    53   2e-07

>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 13/260 (5%)

Query: 3   EIETTMHMLFLCEKARLCWTLTGIPLDRS---TTDFRDMLLGLID-RRSTEQCSFFSVL- 57
           E E+  H LF C  A + W L+   L R+   + DF + +  +++  + T    F  +L 
Sbjct: 206 ENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLP 265

Query: 58  ---CYFIWFDRNRRVWQQINVDPYNIVMAATSFLREWKNAQLNRSNSSVPLASXXXXX-- 112
               + IW  RN  V+ +    P   V++A +   +W NA  +   +  P          
Sbjct: 266 VWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE 325

Query: 113 --XXXXXXXKCNFDAAIHATEGRSSYAGLIRDEAGQFLIACTGHFAGVLQPHIAEAIGLR 170
                    KCNFDA     +  ++   +IR+  G  +   +   A    P  AE   L 
Sbjct: 326 WRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALL 385

Query: 171 EVLYWLLMRNIERVLVETDCLRLFQAVTTGFEPYSDWAPVLEEIKQLISQLSSCELVWAR 230
             L    +R   +V +E DC  L   +  G   +S  A  LE+I    ++ +S +  + R
Sbjct: 386 AALQQTWIRGYTQVFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIR 444

Query: 231 RQVNKPAHALARVACLHPCF 250
           R+ NK AH LA+  C +  F
Sbjct: 445 RKGNKLAHVLAKYGCTYSTF 464


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 99/275 (36%), Gaps = 19/275 (6%)

Query: 1   CGEIETTMHMLFLCEKARLCWTLTGIPLDRS---TTDFRDMLLGLIDRRSTEQCSFFSVL 57
           C E ET  H++F C   +  W    I +       + F D L  LI    T+  +     
Sbjct: 79  CIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRF 138

Query: 58  CYF-----IWFDRNRRVWQQINVDPYNIVMAATSFLREWKNAQLNRSNSSVPLASXXXXX 112
             F     +W  RN  ++QQ    P            EW NA     N++V +A+     
Sbjct: 139 LPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQT 198

Query: 113 XXXXXXX---------KCNFDAAIHATEGRSSYAGLIRDEAGQFLIACTGHFAGVLQPHI 163
                           KCNFD+        +     IR+  G  ++              
Sbjct: 199 SRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLH 258

Query: 164 AEAIGLREVLYWLLMRNIERVLVETDCLRLFQAVTTGFEPYSDWAPVLEEIKQLISQLSS 223
           AEA+G    L  +    +  V  E+D   L   +  G E +S    ++ +I+  + +L  
Sbjct: 259 AEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNG-EDHSLLGTLIYDIRHWMLKLPY 317

Query: 224 CELVWARRQVNKPAHALA-RVACLHPCFRLWDSIP 257
           C L +  R+ N  A ALA  V    P F+ + + P
Sbjct: 318 CSLEFVNRERNSAADALASHVHARDPLFQSYTTPP 352


>AT2G13980.1 | Symbols:  | nucleic acid binding |
           chr2:5869853-5870368 REVERSE
          Length = 171

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)

Query: 120 KCNFDAAIHATEGRSSYAGLIRDEAGQFLIACTGHFAGVLQPHIAEAIGLREVLYWLLMR 179
           KCN+DA  +     S+   +IR+  G      +        P  AE   L   L    +R
Sbjct: 22  KCNYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKALLAALQQTWIR 81

Query: 180 NIERVLVETDCLRLFQAVTTGFEPYSDWAPVLEEIKQLISQLSSCELVWARRQVNKPAHA 239
              RV++E DC  L   V+ G   ++  A +L++I+    + S+ +  + RR  NK AH 
Sbjct: 82  GYLRVIMEGDCETLTNLVS-GSSSHNHLANLLDDIRIWAKKFSNVQFSFVRRGGNKVAHE 140

Query: 240 LARVACLHPCF 250
           LA++ C   CF
Sbjct: 141 LAKLGCNSTCF 151


>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 14/250 (5%)

Query: 5   ETTMHMLFLCEKARLCWTLTGIPLDRSTTDFRDML---------LGLIDRRSTEQCSFFS 55
           ET  H+LF C  ARL W ++ IP+     ++ D +         LG  + +  +      
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLG-GEWADSIYVNLYWVFNLGNGNPQWEKASQLVP 361

Query: 56  VLCYFIWFDRNRRVWQQINVDPYNIVMAATSFLREWK---NAQLNRSNSSVPLASXXXXX 112
            L + +W +RN  V++    +   ++  A   L EW+    A+   +   V  +S     
Sbjct: 362 WLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWR 421

Query: 113 XXXXXXXKCNFDAAIHATEGRSSYAGLIRDEAGQFLIACTGHFAGVLQPHIAEAIGLREV 172
                  KCN DA  +    R     ++R+E G+           +     AE   +R  
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA 481

Query: 173 LYWLLMRNIERVLVETDCLRLFQAVTTGFEPYSDWAPVLEEIKQLISQLSSCELVWARRQ 232
           +  L       V+ E+D   L + +    E +    P ++++++L+SQ +  + V+  R+
Sbjct: 482 VLSLSRFQYNYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPRE 540

Query: 233 VNKPAHALAR 242
            N  A  +AR
Sbjct: 541 GNTLAERVAR 550


>AT3G25270.1 | Symbols:  | nucleic acid binding |
           chr3:9203934-9204965 REVERSE
          Length = 343

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 1   CGEIETTMHMLFLCEKARLCWTLTGIPLD--RST-----TDFRDMLLGLIDRRSTEQCSF 53
           C E ET+ H+ F C  A+  W  +GIP    R+T     T    +L   +  R  +  + 
Sbjct: 60  CQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNL 119

Query: 54  FSVLCYFIWFDRNRRVWQQINVDPYNIVMAATSFLREWK---------NAQLNRSNSSVP 104
              + + +W  RN+ V+QQ ++   N +  A + ++EW+         N Q++ S    P
Sbjct: 120 AIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQP 179

Query: 105 LASXXXXXXXXXXXXKCNFDAAIHATEGRSSYAG-LIRDEAGQFLIACTGHFAGVLQPHI 163
             +            K N+D A +  + R++ AG L+RDE G ++ +     +       
Sbjct: 180 TMARTKWQRPPSTWIKYNYDGAFNH-QTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLE 238

Query: 164 AEAIGLREVLYWLLMRNIERVLVETDCLRLFQAVTTGFEPYS--DWAPVLEEIKQLISQL 221
           +E   L   +     +   +V+ E D  ++ + +      +   +W   + E +    + 
Sbjct: 239 SEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEKLNFGRFNW---IREGRFWQKRF 295

Query: 222 SSCELVWARRQVNKPAHALARVACLHP--CFRLWDSIPQCIATLISHD 267
                 W  R  N+PA  LA+   L P   F+    +P  I + + +D
Sbjct: 296 EEAVFKWVPRTNNQPADILAK-HHLQPNQSFKFHYYVPAFITSTLYYD 342


>AT2G34320.1 | Symbols:  | nucleic acid binding |
           chr2:14484959-14485837 FORWARD
          Length = 292

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 15/274 (5%)

Query: 5   ETTMHMLFLCEKARLCWTLTGIPL--DRSTTDFRDMLLGLIDRRSTEQCSFFSV------ 56
           ET  H+LF C  ARL W ++ IP   +   TD     L  +     E      +      
Sbjct: 20  ETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLGKIGNLVPW 79

Query: 57  LCYFIWFDRNRRVWQQINVDPYNIVMAATSFLREWKNAQLNRSNSSVPLASXXXX---XX 113
           L + +W  RN  +++    D   ++  A     EW   +     +S P            
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKA 139

Query: 114 XXXXXXKCNFDAAIHATEGRSSYAGLIRDEAGQFLIACTGHFAGVLQPHIAEAIGLREVL 173
                 KCN DA       R     ++R+E+G  L               AE   LR  +
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAV 199

Query: 174 YWLLMRNIERVLVETDCLRLFQAVTTGFEPYSDWAPVLEEIKQLISQLSSCELVWARRQV 233
             +   N +R++ E+D   L   + +  + +    P LE+I+QL+      +  +  R  
Sbjct: 200 LTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEEVKFEFTPRGG 258

Query: 234 NKPAHALARVACLHPCF--RLWDSIPQCI-ATLI 264
           NK A  +AR +     +  +L+  +PQ + +TLI
Sbjct: 259 NKVADRIARESISFSNYDPKLFSIVPQWLRSTLI 292