Jatropha Genome Database

JcCB0036891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036891.10 - phase: 1 /pseudo/partial
         (367 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1); alpha...   523   e-149
AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3); alpha...   243   1e-64
AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put...   164   7e-41
AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put...   164   7e-41
AT5G03650.1 | Symbols: SBE2.2 | SBE2.2 (starch branching enzyme ...    51   1e-06
AT2G36390.1 | Symbols: SBE2.1, BE3 | SBE2.1 (starch branching en...    49   5e-06

>AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1);
           alpha-amylase/ isoamylase | chr2:16666078-16672183
           FORWARD
          Length = 783

 Score =  523 bits (1347), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/358 (69%), Positives = 291/358 (81%), Gaps = 12/358 (3%)

Query: 2   NLPFKKNDSDNFLKFRRTFSCNSKSSHPLIQASRRDSGGGAEVETMVVVDQPKLRRRYQV 61
           N  F K  + NF    R  S ++K         RR +    E E + VV++P    R+ +
Sbjct: 22  NHTFPKISAPNFKPLFRPISISAKD--------RRSN----EAENIAVVEKPLKSDRFFI 69

Query: 62  SEGHPAPFGATASDDGVNFSVYSTNAVSASLCLISLDDLPKNKVTEEIPLDPLTNKTGDI 121
           S+G P+PFG T  DDGVNFSVYSTN+VSA++CLISL DL +NKVTEEI LDP  N+TG +
Sbjct: 70  SDGLPSPFGPTVRDDGVNFSVYSTNSVSATICLISLSDLRQNKVTEEIQLDPSRNRTGHV 129

Query: 122 WHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAVISRGEFGVLGPDDNCW 181
           WHVFL+GDFKDMLYGYRFDGK SPEEGHY++SS I+LDPYAKA+ISR EFGVLGPDDNCW
Sbjct: 130 WHVFLRGDFKDMLYGYRFDGKFSPEEGHYYDSSNILLDPYAKAIISRDEFGVLGPDDNCW 189

Query: 182 PQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVRGFTQHESSRTEFPGTYLGVVEKL 241
           PQMA M+P   ++FDWEGD+ LK PQKDL+IYEMHVRGFT+HESS+ EFPGTY GV EKL
Sbjct: 190 PQMACMVPTREEEFDWEGDMHLKLPQKDLVIYEMHVRGFTRHESSKIEFPGTYQGVAEKL 249

Query: 242 DHLKELGVNCIELMPCHEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRN 301
           DHLKELG+NCIELMPCHEFNELEYYSYN++LGD+++NFWGYST+ +FSPM RY+SA + N
Sbjct: 250 DHLKELGINCIELMPCHEFNELEYYSYNTILGDHRVNFWGYSTIGFFSPMIRYASASSNN 309

Query: 302 CGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSVYYMLAPK 359
               AINEFK+LV+EAHKRGIEVIMDVV NHTAEGNEKGPI SFRGVDNSVYYMLAPK
Sbjct: 310 FAGRAINEFKILVKEAHKRGIEVIMDVVLNHTAEGNEKGPIFSFRGVDNSVYYMLAPK 367


>AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3);
           alpha-amylase/ isoamylase | chr4:5784099-5788839 FORWARD
          Length = 764

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/350 (42%), Positives = 199/350 (56%), Gaps = 20/350 (5%)

Query: 18  RTFSCNSKSSHPLIQASRRDSGGGAEVETMVVVDQPKLRRRYQVSEGHPAPFGATASDDG 77
           R FS   K    L    RR      E E   + +     + ++VS G  +P G +  D G
Sbjct: 46  RIFSRKIKDRSTLKVTCRRAHERVVEEEASTMTET----KLFKVSSGEVSPLGVSQVDKG 101

Query: 78  VNFSVYSTNAVSASLCLISLDDLPKNKVTE----EIPLDPLTNKTGDIWHVFLKG-DFKD 132
           +NF+++S NA S +LCL SL    K+   +    E+ LDP  NKTGD WH+ ++     +
Sbjct: 102 INFALFSQNATSVTLCL-SLSQSGKDDTDDDGMIELVLDPSVNKTGDTWHICVEDLPLNN 160

Query: 133 MLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAVISRGEFGVLGPDDNCWPQMAGMIPAAR 192
           +LYGYR DG    ++GH F+ S ++LDPYAK V     FG        + Q  G      
Sbjct: 161 VLYGYRVDGPGEWQQGHRFDRSILLLDPYAKLVKGHSSFG---DSSQKFAQFYGTYDFES 217

Query: 193 DKFDWEGDLPL-KYPQKDLMIYEMHVRGFTQHESSRTE--FPGTYLGVVEKLDHLKELGV 249
             FDW  D      P+KDL+IYEM+VR FT  ESS  +    G+YLG +EK+ HL++LG+
Sbjct: 218 SPFDWGDDYKFPNIPEKDLVIYEMNVRAFTADESSGMDPAIGGSYLGFIEKIPHLQDLGI 277

Query: 250 NCIELMPCHEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINE 309
           N +EL+P  EF+ELE     S   D+ +N WGYSTVN+F+PM+RY+S         A  E
Sbjct: 278 NAVELLPVFEFDELE-LQRRSNPRDHMVNTWGYSTVNFFAPMSRYASGEGDPI--KASKE 334

Query: 310 FKLLVREAHKRGIEVIMDVVFNHTAEGNEKGP-ILSFRGVDNSVYYMLAP 358
           FK +V+  H  GIEVI+DVV+NHT E ++K P   SFRG+DN VYYML P
Sbjct: 335 FKEMVKALHSAGIEVILDVVYNHTNEADDKYPYTTSFRGIDNKVYYMLDP 384


>AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
           putative / starch debranching enzyme, putative |
           chr1:813975-816623 FORWARD
          Length = 882

 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 152/302 (50%), Gaps = 52/302 (17%)

Query: 62  SEGHPAPFGATAS--DDGVNFSVYSTNAVSASLCLISLDDLPKNKVTEEIPLDPLTNKTG 119
           + GHP P G ++   DD  NFS +S ++ +  LCL   DD   +K   E+ LDP  N+TG
Sbjct: 228 TAGHPLPLGLSSGPDDDSWNFSFFSRSSTNVVLCLY--DDSTTDKPALELDLDPYVNRTG 285

Query: 120 DIWHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAV---ISRGEFGVLGP 176
           D+WH  +   +  + YGYR       +E    E   IVLDPYA  V   +S+   G L  
Sbjct: 286 DVWHASVDNTWDFVRYGYRCKETAHSKEDVDVEGEPIVLDPYATVVGKSVSQKYLGSL-- 343

Query: 177 DDNCWPQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVRGFTQHESSR--TEFPGTY 234
                        +    FDW  D+    P + L++Y ++V+GFTQH SS+  +   GT+
Sbjct: 344 -------------SKSPSFDWGEDVSPNIPLEKLLVYRLNVKGFTQHRSSKLPSNVAGTF 390

Query: 235 LGVVEKLDHLKELGVNCIELMPCHEFNELE--YYSYNSVLGDYKMNFWGYSTVNYFSPMT 292
            GV EK+ HLK LG N + L P   F+E +  Y+ +                 ++FSPM 
Sbjct: 391 SGVAEKVSHLKTLGTNAVLLEPIFSFSEQKGPYFPF-----------------HFFSPMD 433

Query: 293 RYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSV 352
            Y   G  N    A+N  K++V++ H  GIEV+++VVF HTA+        + RG+D+S 
Sbjct: 434 IY---GPSNSLESAVNSMKVMVKKLHSEGIEVLLEVVFTHTADSG------ALRGIDDSS 484

Query: 353 YY 354
           YY
Sbjct: 485 YY 486


>AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
           putative / starch debranching enzyme, putative |
           chr1:813975-816623 FORWARD
          Length = 882

 Score =  164 bits (416), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 152/302 (50%), Gaps = 52/302 (17%)

Query: 62  SEGHPAPFGATAS--DDGVNFSVYSTNAVSASLCLISLDDLPKNKVTEEIPLDPLTNKTG 119
           + GHP P G ++   DD  NFS +S ++ +  LCL   DD   +K   E+ LDP  N+TG
Sbjct: 228 TAGHPLPLGLSSGPDDDSWNFSFFSRSSTNVVLCLY--DDSTTDKPALELDLDPYVNRTG 285

Query: 120 DIWHVFLKGDFKDMLYGYRFDGKLSPEEGHYFESSEIVLDPYAKAV---ISRGEFGVLGP 176
           D+WH  +   +  + YGYR       +E    E   IVLDPYA  V   +S+   G L  
Sbjct: 286 DVWHASVDNTWDFVRYGYRCKETAHSKEDVDVEGEPIVLDPYATVVGKSVSQKYLGSL-- 343

Query: 177 DDNCWPQMAGMIPAARDKFDWEGDLPLKYPQKDLMIYEMHVRGFTQHESSR--TEFPGTY 234
                        +    FDW  D+    P + L++Y ++V+GFTQH SS+  +   GT+
Sbjct: 344 -------------SKSPSFDWGEDVSPNIPLEKLLVYRLNVKGFTQHRSSKLPSNVAGTF 390

Query: 235 LGVVEKLDHLKELGVNCIELMPCHEFNELE--YYSYNSVLGDYKMNFWGYSTVNYFSPMT 292
            GV EK+ HLK LG N + L P   F+E +  Y+ +                 ++FSPM 
Sbjct: 391 SGVAEKVSHLKTLGTNAVLLEPIFSFSEQKGPYFPF-----------------HFFSPMD 433

Query: 293 RYSSAGTRNCGHDAINEFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSV 352
            Y   G  N    A+N  K++V++ H  GIEV+++VVF HTA+        + RG+D+S 
Sbjct: 434 IY---GPSNSLESAVNSMKVMVKKLHSEGIEVLLEVVFTHTADSG------ALRGIDDSS 484

Query: 353 YY 354
           YY
Sbjct: 485 YY 486


>AT5G03650.1 | Symbols: SBE2.2 | SBE2.2 (starch branching enzyme
           2.2); 1,4-alpha-glucan branching enzyme |
           chr5:931924-937470 FORWARD
          Length = 805

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 36/162 (22%)

Query: 203 LKYPQ----KDLMIYEMHVRGFTQHESSRTEFPGTYLGVVEK-LDHLKELGVNCIELMPC 257
            K+PQ    K L IYE HV       SS      TY    +  L  +K+LG N +++M  
Sbjct: 280 FKHPQPKRPKSLRIYEAHV-----GMSSTEPMVNTYANFRDDVLPRIKKLGYNAVQIMAI 334

Query: 258 HEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAINEFKLLVREA 317
            E +   YY+            +GY   N+F+P +R        CG     E K L+  A
Sbjct: 335 QEHS---YYAS-----------FGYHVTNFFAPSSR--------CG--TPEELKSLIDRA 370

Query: 318 HKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSVYYMLAPK 359
           H+ G+ V+MD+V +H ++    G +  F G D + Y+   P+
Sbjct: 371 HELGLVVLMDIVHSHASKNTLDG-LNMFDGTD-AHYFHSGPR 410


>AT2G36390.1 | Symbols: SBE2.1, BE3 | SBE2.1 (starch branching
           enzyme 2.1); 1,4-alpha-glucan branching enzyme |
           chr2:15264283-15269940 FORWARD
          Length = 858

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 189 PAARDKFDWEGDLPLKYPQKDLMIYEMHVRGFTQHESSRTEFPGTYLGVVEKLDHLKELG 248
           P   DK+ ++   P K     L IYE HV G +  E     +      V+ ++   K+LG
Sbjct: 307 PPEEDKYAFKHPRPKK--PTSLRIYESHV-GMSSTEPKINTYANFRDDVLPRI---KKLG 360

Query: 249 VNCIELMPCHEFNELEYYSYNSVLGDYKMNFWGYSTVNYFSPMTRYSSAGTRNCGHDAIN 308
            N +++M   E     YY+            +GY   N+F+P +R+ +           +
Sbjct: 361 YNAVQIMAIQEH---AYYAS-----------FGYHVTNFFAPSSRFGTP----------D 396

Query: 309 EFKLLVREAHKRGIEVIMDVVFNHTAEGNEKGPILSFRGVDNSVYY 354
           + K L+ +AH+ G+ V+MD+V +H ++    G +  F G D   ++
Sbjct: 397 DLKSLIDKAHELGLVVLMDIVHSHASKNTLDG-LDMFDGTDGQYFH 441