Jatropha Genome Database

JcCB0036391.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0036391.20 - phase: 2 /TE/partial
         (764 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   357   2e-98
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...   192   6e-49
ATMG00820.1 | Symbols: ORF170 | hypothetical protein | chrM:2285...   100   4e-21
ATMG00240.1 | Symbols: ORF111A | hypothetical protein | chrM:689...    67   4e-11

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  357 bits (915), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/457 (39%), Positives = 264/457 (57%), Gaps = 6/457 (1%)

Query: 271 WRQAMTSEFNALLDNNTWVLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQ 330
           W  AM  E  A+   +TW +         + CKW++++K N+DG+++RYKARLVA+GY+Q
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 331 GPGVDYSDTFSPVVKPMTIRLVVTLAITKAWPIVQLDVNNAFLHGPLTEDVYMQQPPGFK 390
             G+D+ +TFSPV K  +++L++ ++    + + QLD++NAFL+G L E++YM+ PPG+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 391 ----DPTKPTHVCKLIKALYGLKQAPRAXYQALRAFTVAYGFRLSACDHSLFYYIKDGVY 446
               D   P  VC L K++YGLKQA R  +       + +GF  S  DH+ F  I   ++
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 447 CYFLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHH 506
              L+YVDDI+I  NN+  V      L   F L+D  PL  FLG+++ +   GI   Q  
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

Query: 507 YIQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIA 566
           Y   LL+   + G K  S PM   +           VDA AYR+LIG L YL +TR DI+
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF-VDAKAYRRLIGRLMYLQITRLDIS 396

Query: 567 FTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSD 626
           F VNKLSQ+ + P   H  A+ ++L Y+K T+  G+    QA+     +SDA + S    
Sbjct: 397 FAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDT 456

Query: 627 RTSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKWVTSLLRELGQEVD 686
           R ST G+ ++LG   ISW SKKQ+ V++SS EAEYRA++    E+ W+    REL   + 
Sbjct: 457 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 516

Query: 687 TP-VIYCDNISTMYTCQNLVFHTRMKHLEIDIHFVRE 722
            P +++CDN + ++   N VFH R KH+E D H VRE
Sbjct: 517 KPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score =  192 bits (489), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 143/226 (63%), Gaps = 2/226 (0%)

Query: 448 YFLIYVDDIVITGNNNGFVQSFVQALGKRFSLKDPQPLSLFLGMDVRQINGGIFSTQHHY 507
           Y L+YVDDI++TG++N  +   +  L   FS+KD  P+  FLG+ ++    G+F +Q  Y
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKY 61

Query: 508 IQKLLEHAKMDGAKEISTPMASDIQLQKXKNETLPVDATAYRKLIGGLQYLNLTRPDIAF 567
            +++L +A M   K +STP+   ++L    +     D + +R ++G LQYL LTRPDI++
Sbjct: 62  AEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISY 119

Query: 568 TVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYSDADWASDPSDR 627
            VN + Q M  P    +  LKR+LRY+K TI++G+ I K +     A+ D+DWA   S R
Sbjct: 120 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 179

Query: 628 TSTTGFILYLGKVPISWSSKKQRTVARSSTEAEYRAVASTASEVKW 673
            STTGF  +LG   ISWS+K+Q TV+RSSTE EYRA+A TA+E+ W
Sbjct: 180 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225


>ATMG00820.1 | Symbols: ORF170 | hypothetical protein |
           chrM:228573-229085 REVERSE
          Length = 170

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 231 MVTRSKNNIFK--PKVXNSVTKHXXXXXXXXXXVKQALAIPDWRQAMTSEFNALLDNNTW 288
           M+TRSK  I K  PK   ++T            V  AL  P W QAM  E +AL  N TW
Sbjct: 1   MLTRSKAGINKLNPKYSLTIT---TTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTW 57

Query: 289 VLVPYDSAYNLVSCKWIFRVKKNADGSLQRYKARLVARGYSQGPGVDYSDTFSPVVKPMT 348
           +LVP     N++ CKW+F+ K ++DG+L R KARLVA+G+ Q  G+ + +T+SPVV+  T
Sbjct: 58  ILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTAT 117

Query: 349 IRLVVTLA 356
           IR ++ +A
Sbjct: 118 IRTILNVA 125


>ATMG00240.1 | Symbols: ORF111A | hypothetical protein |
           chrM:68918-69253 REVERSE
          Length = 111

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%)

Query: 557 YLNLTRPDIAFTVNKLSQYMQHPNADHWLALKRLLRYLKSTIYYGISIIKQADFGFHAYS 616
           YL +TRPD+ F VN+LSQ+          A+ ++L Y+K T+  G+     +D    A++
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 617 DADWASDPSDRTSTTGF 633
           D+DWAS P  R S TGF
Sbjct: 62  DSDWASCPDTRRSVTGF 78