Jatropha Genome Database

JcCB0035061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.20 + phase: 0 
         (285 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17660.1 | Symbols:  | tRNA (guanine-N7-)-methyltransferase |...   340   5e-94

>AT5G17660.1 | Symbols:  | tRNA (guanine-N7-)-methyltransferase |
           chr5:5818778-5820811 REVERSE
          Length = 312

 Score =  340 bits (872), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 165/248 (66%), Positives = 194/248 (78%), Gaps = 7/248 (2%)

Query: 36  KELRSTDLVAMEYADLNLSHIISGELGHVRVRQHVNPLSSSFSVPARIPDWKEVFRDPTL 95
           K+LRS +LV +EYA+LNL+H IS E+GHVR+RQHVNPLSSSFS PA +P W EV++DP+L
Sbjct: 66  KDLRSNELVELEYAELNLNHKISEEVGHVRIRQHVNPLSSSFSKPAPVPVWDEVYKDPSL 125

Query: 96  PLMVDIGSGSGRFLIWLAKRNRNIGNYLGIEIRQKMQLVNRAEHWIKELALDNLHFLFAN 155
           PLMVDIGSGSGRFL+W A +N    NYLG+EIRQK  LV RA  W+ EL L N+HF+FAN
Sbjct: 126 PLMVDIGSGSGRFLLWQANKNVESRNYLGLEIRQK--LVKRANFWVNELGLSNVHFIFAN 183

Query: 156 ATVSFRQLVVGYPGPLMFVSILCPDPXXXXXXXXXXVVQKPLVDSIINNLAPGGKVFVQS 215
           A VSF  L+  YPGPL  VSILCPDP          VVQKPLV+SI+ NL PGGK+FVQS
Sbjct: 184 AMVSFEHLISSYPGPLEIVSILCPDPHFKKRHQKRRVVQKPLVNSILQNLKPGGKIFVQS 243

Query: 216 DVLEVALDMRNQFDAESDMLRHIDETDLSMLCDKDGWLLNNPMGIRTEREIHAEFEGAKI 275
           DVL+VA DMR+Q D ES++L+H+D  D      +DGWL  NPMGIRTEREIHAEFEGA+I
Sbjct: 244 DVLDVAQDMRDQLDEESNVLQHMDTVD-----TEDGWLTENPMGIRTEREIHAEFEGARI 298

Query: 276 YRRLYQKR 283
           YRRLYQKR
Sbjct: 299 YRRLYQKR 306