Jatropha Genome Database

JcCB0035061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0035061.10 - phase: 0 /pseudo
         (220 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17670.1 | Symbols:  | hydrolase, acting on ester bonds | chr...   259   8e-70

>AT5G17670.1 | Symbols:  | hydrolase, acting on ester bonds |
           chr5:5821082-5822600 FORWARD
          Length = 309

 Score =  259 bits (662), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 134/162 (82%)

Query: 28  RPAVILPGLGNNTADYQKLEVTLKEYGVPTVVAKVSRFDWFRNAAGLVDPNYWRGTLQPR 87
           RPAVILPGLGNNT DY+KLEVTL EYGVP VVA VSR DWFRNAAGLVDP YWRGTL+PR
Sbjct: 33  RPAVILPGLGNNTGDYKKLEVTLGEYGVPAVVAAVSRLDWFRNAAGLVDPAYWRGTLRPR 92

Query: 88  PVLDWYMKRIQEAVNEAKELAQGGTLSLIGHSAGGWLARVYMEEFGLSDISXXXXXXXXX 147
           PVLDWY+ RI +AV EA ELAQG  L LIGHSAGGWLARVYMEE+G SDIS         
Sbjct: 93  PVLDWYLNRIDDAVREANELAQGQGLCLIGHSAGGWLARVYMEEYGNSDISLLLTLGTPH 152

Query: 148 XXXXKGVPGVIDQTRGLLYYVEEHCAKAVYNPQLKYVCIAGR 189
               +G+PGVIDQTRGLLYYVEE+CAKAVY P+LKYVCIAGR
Sbjct: 153 LPPPRGLPGVIDQTRGLLYYVEENCAKAVYTPELKYVCIAGR 194