Jatropha Genome Database

JcCB0034671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.20 + phase: 0 /partial
         (113 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37280.1 | Symbols:  | MRG family protein | chr4:17546748-175...    72   7e-14

>AT4G37280.1 | Symbols:  | MRG family protein |
           chr4:17546748-17549362 REVERSE
          Length = 320

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 46/91 (50%), Gaps = 40/91 (43%)

Query: 15  ETSSGDAPPSNSG-VFSEGERVLAYHGPRIYEAKALFSLCAYLEFLSALIQLITKLNWTC 73
           +T+SG A PSN G +FSEGERVLAYHGPR+Y AK                          
Sbjct: 14  DTASGGASPSNDGRLFSEGERVLAYHGPRVYGAK-------------------------- 47

Query: 74  SLPTASINLKFTVVQKAELRKKEWRYFVHYL 104
                        VQK ELRKKEW+YFVHYL
Sbjct: 48  -------------VQKVELRKKEWKYFVHYL 65