Jatropha Genome Database

JcCB0034671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0034671.10 + phase: 0 
         (86 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37290.1 | Symbols:  | unknown protein | chr4:17549929-175501...    47   2e-06

>AT4G37290.1 | Symbols:  | unknown protein |
          chr4:17549929-17550183 REVERSE
          Length = 84

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 24 TQARPLNTLESHGPRVRDKGFFDGLFLGAIKQSGPSPGQGNRLTDSR-SFGGINKDGPSP 82
           ++RPL   ++    V     FDGL LG+IK SGPSPG+G+++ D + +F  +   GPSP
Sbjct: 22 VESRPLGLTKTEEKFV--ASLFDGLSLGSIKDSGPSPGEGHKVVDRKDTFRFVKHSGPSP 79

Query: 83 -GQGH 86
           G GH
Sbjct: 80 SGPGH 84