Jatropha Genome Database

JcCB0033901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033901.10 - phase: 0 /pseudo/partial
         (70 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80770.1 | Symbols: PDE318 | PDE318 (pigment defective 318); ...    52   6e-08

>AT1G80770.1 | Symbols: PDE318 | PDE318 (pigment defective 318); GTP
           binding | chr1:30355266-30357786 FORWARD
          Length = 451

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 19/72 (26%)

Query: 1   MQTVTYEVVNASYVPTPQAKQQQNET-------------------MLPMVMPSVDIFYSA 41
           +QT    +V++SY+PT    Q+Q E                     LPMVMPS+D++ SA
Sbjct: 49  LQTALSPIVSSSYLPTSYITQKQIEIPTSPEKQSPPVQEGLGAFQKLPMVMPSIDLYASA 108

Query: 42  LRKAKRVPPTKG 53
           LRK+KRV PTKG
Sbjct: 109 LRKSKRVQPTKG 120