Jatropha Genome Database
- JcCB0033831.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0033831.10 + phase: 0
(383 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 502 e-142
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 483 e-137
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 295 3e-80
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 240 1e-63
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 236 2e-62
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 217 1e-56
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 211 7e-55
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 211 7e-55
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 209 3e-54
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 209 3e-54
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 208 4e-54
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 205 4e-53
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 205 4e-53
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 204 9e-53
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 204 1e-52
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 204 1e-52
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 199 3e-51
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 199 3e-51
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 199 3e-51
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 197 1e-50
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 189 3e-48
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 189 3e-48
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 188 4e-48
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 188 5e-48
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 186 2e-47
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 184 6e-47
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 180 1e-45
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 179 2e-45
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 177 8e-45
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 176 2e-44
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 174 7e-44
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 174 1e-43
AT1G34170.2 | Symbols: ARF13 | transcription factor | chr1:12444... 161 6e-40
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 161 6e-40
AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);... 138 6e-33
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 134 1e-31
ATMG00940.1 | Symbols: ORF164 | hypothetical protein | chrM:2514... 77 1e-14
AT3G25730.1 | Symbols: | AP2 domain-containing transcription fa... 67 2e-11
AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription ... 65 5e-11
AT1G01030.1 | Symbols: NGA3 | NGA3 (NGATHA3); transcription fact... 65 8e-11
AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription fact... 64 2e-10
AT2G36080.1 | Symbols: | DNA-binding protein, putative | chr2:1... 63 3e-10
AT2G36080.2 | Symbols: | DNA-binding protein, putative | chr2:1... 63 3e-10
AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription fact... 62 6e-10
AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF T... 62 7e-10
AT1G25560.1 | Symbols: TEM1 | TEM1 (TEMPRANILLO 1); transcriptio... 60 3e-09
AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION ... 58 1e-08
AT3G61970.1 | Symbols: NGA2 | NGA2 (NGATHA2); transcription fact... 57 2e-08
AT5G06250.1 | Symbols: | transcription factor | chr5:1892714-18... 57 2e-08
AT5G06250.2 | Symbols: | transcription factor | chr5:1892714-18... 56 3e-08
AT3G11580.2 | Symbols: | DNA-binding protein, putative | chr3:3... 56 3e-08
AT3G11580.1 | Symbols: | DNA-binding protein, putative | chr3:3... 55 9e-08
AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);... 54 1e-07
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/375 (67%), Positives = 284/375 (75%), Gaps = 32/375 (8%)
Query: 3 ELDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHALILCRVA 62
E +K LDPQLWHACAGSMVQIP +NS VFYF QGH EH+ +P DF + PR+ LILCRV
Sbjct: 2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHA-PRVPPLILCRVV 60
Query: 63 AVKYLADSETDEVYAKISLFPLPNNELNFGEE--MGIC---DNNNGNNTEKPASFAKTLT 117
+VK+LAD+ETDEV+AKI+L PLP N+L+ + +G+ + NGN EKPASFAKTLT
Sbjct: 61 SVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLT 120
Query: 118 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLL 177
QSDANNGGGFSVPRYCAETIFPRLDYSA+PPVQTV+AKD+HGE WKFRHIYRGTPRRHLL
Sbjct: 121 QSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLL 180
Query: 178 TTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGS 237
TTGWSTFVNQKKL+AGDSIVFLR+ESGDLC+GIRRAKRG GL S N
Sbjct: 181 TTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRG----GLGS----------NAG 226
Query: 238 CINPYGGFSLFLKEDEN----------KRNXXXXXXXXXXXXXXXXXXXXXXXXN--GQP 285
NPY GFS FL++DE+ KRN GQ
Sbjct: 227 SDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQA 286
Query: 286 FEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVA 345
FE VYYPRASTPEFCVKA+ VR+AMRI+WC GMRFKMAFETEDSSRISWFMGTV++VQVA
Sbjct: 287 FEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVA 346
Query: 346 DPIRWPNSPWRLLQV 360
DPIRWPNSPWRLLQV
Sbjct: 347 DPIRWPNSPWRLLQV 361
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 483 bits (1243), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/361 (66%), Positives = 283/361 (78%), Gaps = 15/361 (4%)
Query: 5 DKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHALILCRVAAV 64
+KGLDPQLWHACAG MV++PP+NSKVFYFPQGHAE++ VDF + P I ++LCRV A+
Sbjct: 13 EKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFGNLP-IPPMVLCRVLAI 71
Query: 65 KYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNG--NNTEKPASFAKTLTQSDAN 122
KY+AD+E+DEV+AK+ L PL ++E E G +++NG +N+EK SFAKTLTQSDAN
Sbjct: 72 KYMADAESDEVFAKLRLIPLKDDEY-VDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDAN 130
Query: 123 NGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWS 182
NGGGFSVPRYCAETIFPRLDY+A+PPVQT++AKDVHG+VWKFRHIYRGTPRRHLLTTGWS
Sbjct: 131 NGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWS 190
Query: 183 TFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCINPY 242
FVNQKKLVAGDSIVF+RAE+GDLC+GIRRAKRG GNG + S +GW + GSC
Sbjct: 191 NFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYS--AGW-NPIGGSC---- 243
Query: 243 GGFSLFLKEDEN---KRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEF 299
G+S L+EDE+ +R+ +G+PFE VYYPRAST EF
Sbjct: 244 -GYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAISGRPFEVVYYPRASTSEF 302
Query: 300 CVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQ 359
CVKA RAAMRI WC GMRFKMAFETEDSSRISWFMGTV++V V+DPIRWPNSPWRLLQ
Sbjct: 303 CVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQ 362
Query: 360 V 360
V
Sbjct: 363 V 363
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 161/365 (44%), Positives = 213/365 (58%), Gaps = 31/365 (8%)
Query: 6 KGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHALILCRVAAVK 65
+ +DP +W ACAG+ VQIP ++S+V+YFPQGH EH P+ S+ P + + C + +++
Sbjct: 14 REVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHC-CPL-LSTLPSSTSPVPCIITSIQ 71
Query: 66 YLADSETDEVYAKISLFPL------PNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQS 119
LAD TDEV+A + L P+ P N FG G D+NN K +FAK LT S
Sbjct: 72 LLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNN-----KVTTFAKILTPS 126
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
DANNGGGFSVPR+CA+++FP L++ DPPVQ + D+HG VW FRHIYRGTPRRHLLTT
Sbjct: 127 DANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTT 186
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCI 239
GWS FVN KKL+AGDS+VF+R + ++ +G+RR +P S ++
Sbjct: 187 GWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR------------TPISSSDGGSSYYGG 234
Query: 240 NPYGGF---SLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRAST 296
+ Y G+ S KED+ G PFE V+YP A
Sbjct: 235 DEYNGYYSQSSVAKEDDGSPKKTFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGW 294
Query: 297 PEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASV-QVADPIRWPNSPW 355
EF V+A V ++M + W G R KMA ETEDSSRI+WF G V+S Q P W SPW
Sbjct: 295 SEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQETGP--WRGSPW 352
Query: 356 RLLQV 360
+ LQ+
Sbjct: 353 KQLQI 357
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 188/362 (51%), Gaps = 53/362 (14%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRI-----HALILCRVAAVK 65
+LWHACAG + +P + V YFPQGH E + V +SS I + I+CRV V+
Sbjct: 65 ELWHACAGPLTCLPKKGNVVVYFPQGHLEQD-AMVSYSSPLEIPKFDLNPQIVCRVVNVQ 123
Query: 66 YLADSETDEVYAKISLFPLPNNELNFGE-----EMGICDNNNGNNTEK--PASFAKTLTQ 118
LA+ +TDEVY +++L PL + GE E+G + NG+++ K P F KTLT
Sbjct: 124 LLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTA 183
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE F LDY P Q ++AKD+HG WKFRHIYRG PRRHLLT
Sbjct: 184 SDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLT 243
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSC 238
TGWS FV+QK LV+GD+++FLR E G+L LGIRRA R NGL S SC
Sbjct: 244 TGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPR--NGLPDS------IIEKNSC 295
Query: 239 INPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPE 298
N SL K F Y PRA+ E
Sbjct: 296 SNI---LSLVANAVSTKSM----------------------------FHVFYSPRATHAE 324
Query: 299 FCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLL 358
F + ++R C G RF+M FE +DS G V V DP RWPNS WR L
Sbjct: 325 FVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPE-RRCAGVVTGVCDLDPYRWPNSKWRCL 383
Query: 359 QV 360
V
Sbjct: 384 LV 385
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 186/360 (51%), Gaps = 55/360 (15%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---ILCRVAAVKYL 67
+LWHACAG ++ +P S V YFPQGH E Q+P DFS++ I+ L + CR+ VK
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLE--QAP-DFSAA--IYGLPPHVFCRILDVKLH 108
Query: 68 ADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNN-------TEKPASFAKTLTQSD 120
A++ TDEVYA++SL P + ++ GI D + G + P F KTLT SD
Sbjct: 109 AETTTDEVYAQVSLLP-ESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASD 167
Query: 121 ANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTG 180
+ GGFSVPR AE FP LDYS P Q ++A+D+HG W+FRHIYRG PRRHLLTTG
Sbjct: 168 TSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTG 227
Query: 181 WSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCIN 240
WS FVN+KKLV+GD+++FLR + G L LG+RRA S I
Sbjct: 228 WSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRA-----------------------SQIE 264
Query: 241 PYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEFC 300
S ++ N N F Y P+AS F
Sbjct: 265 GTAALSAQYNQNMNHNNFSEVAHAISTHSV---------------FSISYNPKASWSNFI 309
Query: 301 VKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQV 360
+ A + +C GMRFK E+ED+S G ++ + DPIRWP S WR L V
Sbjct: 310 IPAPKFLKVVDYPFCIGMRFKARVESEDASE-RRSPGIISGISDLDPIRWPGSKWRCLLV 368
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 143/220 (65%), Gaps = 14/220 (6%)
Query: 6 KGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVDF-SSSPRIHALILCR 60
K ++ QLWHACAG +V +PP+ S V YFPQGH+E Q DF + P + + ++C
Sbjct: 18 KPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICL 77
Query: 61 VAAVKYLADSETDEVYAKISLFPLP--NNELNFGEEMGICDNNNGNNTEKPASF-AKTLT 117
+ +V AD+ETDEVYA+++L P+ + E +MG+ N +P F KTLT
Sbjct: 78 LHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLN------RQPTEFFCKTLT 131
Query: 118 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLL 177
SD + GGFSVPR AE IFP LD+S PP Q +VAKD+H W FRHIYRG P+RHLL
Sbjct: 132 ASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLL 191
Query: 178 TTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGT 217
TTGWS FV+ K+L AGDS++F+R E L LGIRRA R T
Sbjct: 192 TTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQT 231
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 285 PFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
PF + PRAS EF V + A+ Q GMRF+M FETED + +MGTV +
Sbjct: 261 PFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCG-VRRYMGTVTGISD 319
Query: 345 ADPIRWPNSPWRLLQV 360
DP+RW S WR LQV
Sbjct: 320 LDPVRWKGSQWRNLQV 335
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 139/217 (64%), Gaps = 15/217 (6%)
Query: 8 LDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVD--FSSSPRIHALILCRV 61
L+ +LWHACAG +V +PP+ S+V YFPQGH+E + VD + P +H ++C++
Sbjct: 22 LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 81
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELN---FGEEMGICDNNNGNNTEKPASFAKTLTQ 118
V AD ETDEVYA+++L PL E E+G+ N F KTLT
Sbjct: 82 HNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTN------YFCKTLTA 135
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE +FP LDYS PP Q ++A+D+H WKFRHI+RG P+RHLLT
Sbjct: 136 SDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLT 195
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
TGWS FV+ K+LVAGDS++F+ + L LGIRRA R
Sbjct: 196 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANR 232
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 286 FEAVYYPRASTPEFCVK-ASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
F Y PRAS EF + A V+A + GMRF+M FETE+SS + +MGT+ +
Sbjct: 265 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 323
Query: 345 ADPIRWPNSPWRLLQV 360
DP RW NS WR ++V
Sbjct: 324 LDPTRWANSHWRSVKV 339
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 139/217 (64%), Gaps = 15/217 (6%)
Query: 8 LDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVD--FSSSPRIHALILCRV 61
L+ +LWHACAG +V +PP+ S+V YFPQGH+E + VD + P +H ++C++
Sbjct: 20 LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELN---FGEEMGICDNNNGNNTEKPASFAKTLTQ 118
V AD ETDEVYA+++L PL E E+G+ N F KTLT
Sbjct: 80 HNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTN------YFCKTLTA 133
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE +FP LDYS PP Q ++A+D+H WKFRHI+RG P+RHLLT
Sbjct: 134 SDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLT 193
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
TGWS FV+ K+LVAGDS++F+ + L LGIRRA R
Sbjct: 194 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANR 230
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 286 FEAVYYPRASTPEFCVK-ASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
F Y PRAS EF + A V+A + GMRF+M FETE+SS + +MGT+ +
Sbjct: 263 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 321
Query: 345 ADPIRWPNSPWRLLQV 360
DP RW NS WR ++V
Sbjct: 322 LDPTRWANSHWRSVKV 337
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 12/217 (5%)
Query: 6 KGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVDF-SSSPRIHALILCR 60
+ ++ +LWHACAG ++ +PP S V YFPQGH+E Q DF S P + + ++C
Sbjct: 19 RNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICM 78
Query: 61 VAAVKYLADSETDEVYAKISLFPLPNNELN--FGEEMGICDNNNGNNTEKPASFAKTLTQ 118
+ V AD ETDEVYA+++L P+ + + +MG+ N N F KTLT
Sbjct: 79 LHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEF-----FCKTLTA 133
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE IFP LD+S PP Q +VAKD+H W FRHIYRG P+RHLLT
Sbjct: 134 SDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLT 193
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
TGWS FV+ K+L AGDS++F+R L LGIRRA R
Sbjct: 194 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANR 230
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 285 PFEAVYYPRASTP-EFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQ 343
PF Y PR + P EF V + AM Q GMRF+M FETE+ + +MGTV +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 344 VADPIRWPNSPWRLLQV 360
DP+RW NS WR LQ+
Sbjct: 321 DLDPVRWKNSQWRNLQI 337
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 12/217 (5%)
Query: 6 KGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVDF-SSSPRIHALILCR 60
+ ++ +LWHACAG ++ +PP S V YFPQGH+E Q DF S P + + ++C
Sbjct: 19 RNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICM 78
Query: 61 VAAVKYLADSETDEVYAKISLFPLPNNELN--FGEEMGICDNNNGNNTEKPASFAKTLTQ 118
+ V AD ETDEVYA+++L P+ + + +MG+ N N F KTLT
Sbjct: 79 LHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEF-----FCKTLTA 133
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE IFP LD+S PP Q +VAKD+H W FRHIYRG P+RHLLT
Sbjct: 134 SDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLT 193
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
TGWS FV+ K+L AGDS++F+R L LGIRRA R
Sbjct: 194 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANR 230
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 285 PFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
PF Y PRA+ EF V + AM Q GMRF+M FETE+ + +MGTV +
Sbjct: 262 PFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGISD 320
Query: 345 ADPIRWPNSPWRLLQV 360
DP+RW NS WR LQ+
Sbjct: 321 LDPVRWKNSQWRNLQI 336
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 137/217 (63%), Gaps = 12/217 (5%)
Query: 6 KGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVDF-SSSPRIHALILCR 60
+ ++ +LWHACAG ++ +PP S V YFPQGH+E Q DF S P + + ++C
Sbjct: 19 RNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICM 78
Query: 61 VAAVKYLADSETDEVYAKISLFPLPNNELN--FGEEMGICDNNNGNNTEKPASFAKTLTQ 118
+ V AD ETDEVYA+++L P+ + + +MG+ N N F KTLT
Sbjct: 79 LHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEF-----FCKTLTA 133
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSVPR AE IFP LD+S PP Q +VAKD+H W FRHIYRG P+RHLLT
Sbjct: 134 SDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLT 193
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
TGWS FV+ K+L AGDS++F+R L LGIRRA R
Sbjct: 194 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANR 230
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 285 PFEAVYYPRASTP-EFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQ 343
PF Y PR + P EF V + AM Q GMRF+M FETE+ + +MGTV +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 344 VADPIRWPNSPWRLLQV 360
DP+RW NS WR LQ+
Sbjct: 321 DLDPVRWKNSQWRNLQI 337
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 139/222 (62%), Gaps = 15/222 (6%)
Query: 3 ELDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVD--FSSSPRIHAL 56
E +K L+ +LWHACAG +V +P S+V YFPQGH+E + VD + P +
Sbjct: 14 EGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQ 73
Query: 57 ILCRVAAVKYLADSETDEVYAKISLFPL---PNNELNFGEEMGICDNNNGNNTEKPASFA 113
++C++ V AD ETDEVYA+++L PL E E+GI N F
Sbjct: 74 LICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSN------YFC 127
Query: 114 KTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPR 173
KTLT SD + GGFSVPR AE +FP LDY+ PP Q ++A+D+H WKFRHI+RG P+
Sbjct: 128 KTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPK 187
Query: 174 RHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
RHLLTTGWS FV+ K+LVAGDS++F+R E L LGIR A R
Sbjct: 188 RHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATR 229
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 286 FEAVYYPRASTPEFCVKASS-VRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
F ++PRAS EF ++ S ++A + GMRF+M FETE+SS + +MGT+ +
Sbjct: 262 FTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESS-VRRYMGTITGISD 320
Query: 345 ADPIRWPNSPWRLLQV 360
D +RWPNS WR ++V
Sbjct: 321 LDSVRWPNSHWRSVKV 336
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 139/222 (62%), Gaps = 15/222 (6%)
Query: 3 ELDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH----SQSPVD--FSSSPRIHAL 56
E +K L+ +LWHACAG +V +P S+V YFPQGH+E + VD + P +
Sbjct: 14 EGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQ 73
Query: 57 ILCRVAAVKYLADSETDEVYAKISLFPL---PNNELNFGEEMGICDNNNGNNTEKPASFA 113
++C++ V AD ETDEVYA+++L PL E E+GI N F
Sbjct: 74 LICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSN------YFC 127
Query: 114 KTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPR 173
KTLT SD + GGFSVPR AE +FP LDY+ PP Q ++A+D+H WKFRHI+RG P+
Sbjct: 128 KTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPK 187
Query: 174 RHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
RHLLTTGWS FV+ K+LVAGDS++F+R E L LGIR A R
Sbjct: 188 RHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATR 229
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 286 FEAVYYPRASTPEFCVKASS-VRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQV 344
F ++PRAS EF ++ S ++A + GMRF+M FETE+SS + +MGT+ +
Sbjct: 262 FTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESS-VRRYMGTITGISD 320
Query: 345 ADPIRWPNSPWRLLQV 360
D +RWPNS WR ++V
Sbjct: 321 LDSVRWPNSHWRSVKV 336
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 204 bits (519), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 168/362 (46%), Gaps = 48/362 (13%)
Query: 4 LDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL-----IL 58
L L +LWHACAG +V +P +V+YFP+GH E ++ + ++ + IL
Sbjct: 15 LSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKIL 74
Query: 59 CRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQ 118
C+V ++ A+ ETDEVYA+I+L P EL+ E SF KTLT
Sbjct: 75 CKVINIQRRAEPETDEVYAQITLLP----ELDQSEPTSPDAPVQEPEKCTVHSFCKTLTA 130
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSV R A+ P LD S PP Q +VA D+H W FRHI+RG PRRHLLT
Sbjct: 131 SDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLT 190
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSC 238
TGWS FV+ KKLVAGD+ +FLR E+ +L +G+RR R
Sbjct: 191 TGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMR----------------------- 227
Query: 239 INPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPE 298
+ N G F Y PR S E
Sbjct: 228 ---------------QQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSE 272
Query: 299 FCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLL 358
F V + A + GMRFKM FE E++ F GT+ VQ W +S WR L
Sbjct: 273 FIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSL 331
Query: 359 QV 360
+V
Sbjct: 332 KV 333
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 168/362 (46%), Gaps = 48/362 (13%)
Query: 4 LDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL-----IL 58
L L +LWHACAG +V +P +V+YFP+GH E ++ + ++ + IL
Sbjct: 15 LSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKIL 74
Query: 59 CRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQ 118
C+V ++ A+ ETDEVYA+I+L P EL+ E SF KTLT
Sbjct: 75 CKVINIQRRAEPETDEVYAQITLLP----ELDQSEPTSPDAPVQEPEKCTVHSFCKTLTA 130
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSV R A+ P LD S PP Q +VA D+H W FRHI+RG PRRHLLT
Sbjct: 131 SDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLT 190
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSC 238
TGWS FV+ KKLVAGD+ +FLR E+ +L +G+RR R
Sbjct: 191 TGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMR----------------------- 227
Query: 239 INPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPE 298
+ N G F Y PR S E
Sbjct: 228 ---------------QQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSE 272
Query: 299 FCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLL 358
F V + A + GMRFKM FE E++ F GT+ VQ W +S WR L
Sbjct: 273 FIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSL 331
Query: 359 QV 360
+V
Sbjct: 332 KV 333
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/362 (35%), Positives = 168/362 (46%), Gaps = 48/362 (13%)
Query: 4 LDKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL-----IL 58
L L +LWHACAG +V +P +V+YFP+GH E ++ + ++ + IL
Sbjct: 15 LSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKIL 74
Query: 59 CRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQ 118
C+V ++ A+ ETDEVYA+I+L P EL+ E SF KTLT
Sbjct: 75 CKVINIQRRAEPETDEVYAQITLLP----ELDQSEPTSPDAPVQEPEKCTVHSFCKTLTA 130
Query: 119 SDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLT 178
SD + GGFSV R A+ P LD S PP Q +VA D+H W FRHI+RG PRRHLLT
Sbjct: 131 SDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLT 190
Query: 179 TGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSC 238
TGWS FV+ KKLVAGD+ +FLR E+ +L +G+RR R
Sbjct: 191 TGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMR----------------------- 227
Query: 239 INPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPE 298
+ N G F Y PR S E
Sbjct: 228 ---------------QQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSE 272
Query: 299 FCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLL 358
F V + A + GMRFKM FE E++ F GT+ VQ W +S WR L
Sbjct: 273 FIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSL 331
Query: 359 QV 360
+V
Sbjct: 332 KV 333
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 142/234 (60%), Gaps = 32/234 (13%)
Query: 5 DKGLDPQ------LWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPR-----I 53
++ LDP+ LWHACAG +V +P + +VFYFPQGH E ++ + ++ + +
Sbjct: 49 ERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDL 108
Query: 54 HALILCRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKP---- 109
+ +LCRV V A+++TDEVYA+I+L P N + N E+ E P
Sbjct: 109 PSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEK------------EAPLPPP 156
Query: 110 -----ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKF 164
SF KTLT SD + GGFSV R A+ P LD S PP Q +VAKD+H W+F
Sbjct: 157 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 216
Query: 165 RHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
RHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR E+G+L +G+RRA R G
Sbjct: 217 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQG 270
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 283 GQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASV 342
G F Y PR S EF V +++ + GMRFKM FE E++ F GT+ +
Sbjct: 297 GTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGI 355
Query: 343 QVADPIRWPNSPWRLLQV 360
+ +DP RWP S WR L+V
Sbjct: 356 EESDPTRWPKSKWRSLKV 373
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 142/234 (60%), Gaps = 32/234 (13%)
Query: 5 DKGLDPQ------LWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPR-----I 53
++ LDP+ LWHACAG +V +P + +VFYFPQGH E ++ + ++ + +
Sbjct: 49 ERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDL 108
Query: 54 HALILCRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKP---- 109
+ +LCRV V A+++TDEVYA+I+L P N + N E+ E P
Sbjct: 109 PSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEK------------EAPLPPP 156
Query: 110 -----ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKF 164
SF KTLT SD + GGFSV R A+ P LD S PP Q +VAKD+H W+F
Sbjct: 157 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 216
Query: 165 RHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
RHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR E+G+L +G+RRA R G
Sbjct: 217 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQG 270
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 283 GQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASV 342
G F Y PR S EF V +++ + GMRFKM FE E++ F GT+ +
Sbjct: 297 GTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGI 355
Query: 343 QVADPIRWPNSPWRLLQV 360
+ +DP RWP S WR L+V
Sbjct: 356 EESDPTRWPKSKWRSLKV 373
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 142/234 (60%), Gaps = 32/234 (13%)
Query: 5 DKGLDPQ------LWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPR-----I 53
++ LDP+ LWHACAG +V +P + +VFYFPQGH E ++ + ++ + +
Sbjct: 49 ERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDL 108
Query: 54 HALILCRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKP---- 109
+ +LCRV V A+++TDEVYA+I+L P N + N E+ E P
Sbjct: 109 PSKLLCRVINVDLKAEADTDEVYAQITLLPEANQDENAIEK------------EAPLPPP 156
Query: 110 -----ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKF 164
SF KTLT SD + GGFSV R A+ P LD S PP Q +VAKD+H W+F
Sbjct: 157 PRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRF 216
Query: 165 RHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
RHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR E+G+L +G+RRA R G
Sbjct: 217 RHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQG 270
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 283 GQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASV 342
G F Y PR S EF V +++ + GMRFKM FE E++ F GT+ +
Sbjct: 297 GTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGI 355
Query: 343 QVADPIRWPNSPWRLLQV 360
+ +DP RWP S WR L+V
Sbjct: 356 EESDPTRWPKSKWRSLKV 373
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 135/215 (62%), Gaps = 11/215 (5%)
Query: 8 LDPQLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSS------PRIHALILCRV 61
++ +LWHACAG +V +P + S V+YF QGH+E S++ P + + ++C+V
Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASF-AKTLTQSD 120
V AD ++DE+YA++SL P+ + F + D ++ P F KTLT SD
Sbjct: 111 HNVTLHADKDSDEIYAQMSLQPVHSERDVFP----VPDFGMLRGSKHPTEFFCKTLTASD 166
Query: 121 ANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTG 180
+ GGFSVPR AE +FP LDYSA PP Q +V +D+H W FRHIYRG P+RHLLTTG
Sbjct: 167 TSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTG 226
Query: 181 WSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
WS FV K+L AGDS++F+R E L +G+RRA R
Sbjct: 227 WSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANR 261
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 282 NGQPFEAVYYPRASTPEFCVKASSVRAAM-RIQWCCGMRFKMAFETEDSSRISWFMGTVA 340
N PF Y PRA EF + + R A+ Q GMRF M FETEDS + +MGT+
Sbjct: 290 NRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGK-RRYMGTIV 348
Query: 341 SVQVADPIRWPNSPWRLLQV 360
+ DP+RWP S WR LQV
Sbjct: 349 GISDLDPLRWPGSKWRNLQV 368
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 22/220 (10%)
Query: 5 DKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH-----SQSPVD-----FSSSPRIH 54
D L +LW ACAG +V++P +VFYFPQGH E +Q VD F+ P+I
Sbjct: 36 DDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKI- 94
Query: 55 ALILCRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SF 112
LCRV +V A+ ETDEVYA+I+L P + + + + KP SF
Sbjct: 95 ---LCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVE------PAKPTVDSF 145
Query: 113 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTP 172
K LT SD + GGFSV R A P LD + P Q +VA+D+HG W+F+HI+RG P
Sbjct: 146 VKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQP 205
Query: 173 RRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRR 212
RRHLLTTGWSTFV K+LVAGD+ VFLR E+GDL +G+RR
Sbjct: 206 RRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRR 245
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 22/220 (10%)
Query: 5 DKGLDPQLWHACAGSMVQIPPINSKVFYFPQGHAEH-----SQSPVD-----FSSSPRIH 54
D L +LW ACAG +V++P +VFYFPQGH E +Q VD F+ P+I
Sbjct: 15 DDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKI- 73
Query: 55 ALILCRVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SF 112
LCRV +V A+ ETDEVYA+I+L P + + + + KP SF
Sbjct: 74 ---LCRVLSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLVE------PAKPTVDSF 124
Query: 113 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTP 172
K LT SD + GGFSV R A P LD + P Q +VA+D+HG W+F+HI+RG P
Sbjct: 125 VKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQP 184
Query: 173 RRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRR 212
RRHLLTTGWSTFV K+LVAGD+ VFLR E+GDL +G+RR
Sbjct: 185 RRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRR 224
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEH---SQSPVDFSSSPRIHAL---ILCRVAAV 64
+LW CAG +V +P +V+YFPQGH E S VD ++ + L ILC V V
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 65 KYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQSDANNG 124
A+ +TDEVYA+I+L P+ E M + K SF+K LT SD +
Sbjct: 72 SLQAEKDTDEVYAQITLIPVGTE---VDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTH 128
Query: 125 GGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTF 184
GGFSV R A P LD + P Q +VA+DVHG WKF+HI+RG PRRHLLTTGWSTF
Sbjct: 129 GGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTF 188
Query: 185 VNQKKLVAGDSIVFLRAESGDLCLGIRRA 213
V K+LVAGD+ VFLR E+G+L +G+RRA
Sbjct: 189 VTSKRLVAGDTFVFLRGENGELRVGVRRA 217
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEH---SQSPVDFSSSPRIHAL---ILCRVAAV 64
+LW CAG +V +P +V+YFPQGH E S VD ++ + L ILC V V
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 65 KYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQSDANNG 124
A+ +TDEVYA+I+L P+ E M + K SF+K LT SD +
Sbjct: 72 SLQAEKDTDEVYAQITLIPVGTE---VDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTH 128
Query: 125 GGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTF 184
GGFSV R A P LD + P Q +VA+DVHG WKF+HI+RG PRRHLLTTGWSTF
Sbjct: 129 GGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTF 188
Query: 185 VNQKKLVAGDSIVFLRAESGDLCLGIRRA 213
V K+LVAGD+ VFLR E+G+L +G+RRA
Sbjct: 189 VTSKRLVAGDTFVFLRGENGELRVGVRRA 217
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 129/216 (59%), Gaps = 20/216 (9%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEH-----------SQSPVDFSSSPRIHALILC 59
+LW CAG +V++P +VFYFPQGH E + PV F P+I LC
Sbjct: 25 ELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPV-FDLPPKI----LC 79
Query: 60 RVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPASFAKTLTQS 119
RV V A+ ETDEVYA+I+L P E + E + G ++ SF K LT S
Sbjct: 80 RVLDVTLKAEHETDEVYAQITLQP----EEDQSEPTSLDPPIVGPTKQEFHSFVKILTAS 135
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + GGFSV R A P LD + P Q +V +D+HG W+F+HI+RG PRRHLLTT
Sbjct: 136 DTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTT 195
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKR 215
GWSTFV+ K+LVAGD+ VFLR E+GDL +G+RR R
Sbjct: 196 GWSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLAR 231
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 171/361 (47%), Gaps = 61/361 (16%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---------ILCRV 61
QLW CAG + IP + KV+YFPQG+ E V+ S+ ++ L + CRV
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGNIEL----VEASTREELNELQPICDLPSKLQCRV 82
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQS 119
A+ ++ +DE YAKI+L P + E + + N +P SF K LT S
Sbjct: 83 IAIHLKVENNSDETYAKITLMP----DTTVSENLQVVIPTQNENQFRPLVNSFTKVLTAS 138
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + G FSVP+ A P LD S P Q ++A D+HG W FRH YRGTP+RHLLTT
Sbjct: 139 DISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTT 198
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCI 239
GW+ F KKLV GD IVF+R E+G+L +GIRRA+ G + PS S C+
Sbjct: 199 GWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQG------NIPSSIVSI---DCM 249
Query: 240 NPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEF 299
+G + N F VY PR+S +F
Sbjct: 250 R-HGVIA----------------------------SAKHAFDNQCMFIVVYKPRSS--QF 278
Query: 300 CVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQ 359
V A+ ++ G RF M FE +D S +F GT+ V P W S WR L+
Sbjct: 279 IVSYDKFLDAVNNKFNVGSRFTMRFEGDDLSERRYF-GTIIGVSNFSP-HWKCSDWRSLE 336
Query: 360 V 360
V
Sbjct: 337 V 337
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 168/361 (46%), Gaps = 66/361 (18%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---------ILCRV 61
QLW CAG + IP + KV+YFPQGH E V+ S+ ++ L + CRV
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIEL----VEASTREELNELQPICDFPSKLQCRV 82
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQS 119
A++ ++ +DE YA+I+L P + + N +P SF K LT S
Sbjct: 83 IAIQLKVENNSDETYAEITLMP---------DTTQVVIPTQNQNQFRPLVNSFTKVLTAS 133
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + GGFSVP+ A P LD S P Q ++A D+HG W+FRHIYRGT +RHLLT
Sbjct: 134 DTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTI 193
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCI 239
GW+ F KKLV GD IVF+R E+G+L +GIRRA G + SS S S +G
Sbjct: 194 GWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQG--NIPSSIVS-IESMRHGIIA 250
Query: 240 NPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEF 299
+ F N F VY PR+S +F
Sbjct: 251 SAKHAFD-----------------------------------NQCMFIVVYKPRSS--QF 273
Query: 300 CVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQ 359
V + ++ G RF M FE +D S F GT+ V P W S WR L+
Sbjct: 274 IVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSF-GTIIGVSDFSP-HWKCSEWRSLE 331
Query: 360 V 360
V
Sbjct: 332 V 332
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 167/364 (45%), Gaps = 72/364 (19%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---------ILCRV 61
QLW CAG + IP + KV+YFPQGH E V+ S+ ++ L + CRV
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIEL----VETSTREELNELQPICDLPSKLQCRV 82
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQS 119
A+ ++ +DE YA+I+L P + + N +P SF K LT S
Sbjct: 83 IAIHLKVENNSDETYAEITLMP---------DTTQVVIPTQNENQFRPLVNSFTKVLTAS 133
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + GGF VP+ A P LD S P Q ++A D+HG W+F H YRGTP+RHLLTT
Sbjct: 134 DTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTT 193
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTT---NG 236
GW+ F KKLVAGD IVF+R E+G+L +GIRRA+ G + PS S +G
Sbjct: 194 GWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQG------NIPSSIVSIDCMRHG 247
Query: 237 SCINPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRAST 296
+ F N F VY PR+S
Sbjct: 248 VVASAKHAFD-----------------------------------NQCMFTVVYKPRSS- 271
Query: 297 PEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWR 356
+F V A+ ++ G RF M E +D S F GT+ V P W S WR
Sbjct: 272 -KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCF-GTIIGVSDFSP-HWKCSEWR 328
Query: 357 LLQV 360
L+V
Sbjct: 329 SLEV 332
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 168/357 (47%), Gaps = 58/357 (16%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPV-----DFSSSPRIHALILCRVAAVK 65
QLW CAG + IP + V+YFPQG+ E Q+ + + + + CRV A+
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 66 YLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQSDANN 123
++ +DE+YA+I+L P + + N +P SF K LT SD +
Sbjct: 87 LKVENNSDEIYAEITLMP---------DTTQVVIPTQSENRFRPLVNSFTKVLTASDTSA 137
Query: 124 GGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWST 183
GGFSVP+ A P LD S P Q ++A D+H W+FRH YRGTP+RH LTTGW+
Sbjct: 138 YGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNE 197
Query: 184 FVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCINPYG 243
F+ KKLV GD IVF+R E+G+L +GIRRA+ G + PS S C+ +G
Sbjct: 198 FITSKKLVKGDVIVFVRGETGELRVGIRRARHQQG------NIPSSIVSI---DCMR-HG 247
Query: 244 GFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEFCVKA 303
+ N F VY PR+S +F V
Sbjct: 248 VIA----------------------------SAKHAFDNQCIFIVVYKPRSS--QFIVSY 277
Query: 304 SSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQV 360
A+ ++ G RF M FE +D S +F GT+ V P W S WR L+V
Sbjct: 278 DKFLDAVNNKFNVGSRFTMRFEGDDFSERRYF-GTIIGVSDFSP-HWKCSEWRSLEV 332
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 165/361 (45%), Gaps = 68/361 (18%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---------ILCRV 61
QLW CAG + IP + K++YFPQG+ E V+ S+ ++ L + CRV
Sbjct: 27 QLWKLCAGPLCDIPKLGEKIYYFPQGNIEL----VEASTREELNELKPICDLPSKLQCRV 82
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQS 119
A++ ++ +DE YA+I+L P + + N +P SF K LT S
Sbjct: 83 IAIQLKVENNSDETYAEITLMP---------DTTQVVIPTQNENQFRPLVNSFTKVLTAS 133
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + GGF VP+ A P LD S P Q ++A D+HG W+F H YRGTP+RHLLTT
Sbjct: 134 DTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTT 191
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCI 239
GW+ F KKLVAGD IVF+R E+G+L +GIRRA G S
Sbjct: 192 GWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAK 251
Query: 240 NPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEF 299
+ + +F+ VY PR+S +F
Sbjct: 252 HAFDNQCMFI--------------------------------------VVYKPRSS--QF 271
Query: 300 CVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQ 359
V A+ ++ G RF M FE +D S +F GT+ V P W S WR L+
Sbjct: 272 IVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYF-GTIIGVSDFSP-HWKCSEWRNLE 329
Query: 360 V 360
V
Sbjct: 330 V 330
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 169/365 (46%), Gaps = 72/365 (19%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAE-----------HSQSPVDFSSSPRIHALILC 59
+LW+ CAG + +P KV+YFPQGH E H + D S R C
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLR------C 78
Query: 60 RVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPAS--FAKTLT 117
RV A+ D TDEVYA+ISL P + + +N +T +P F+K LT
Sbjct: 79 RVVAIDRKVDKNTDEVYAQISLMP---------DTTEVMTHNTTMDTRRPIVYFFSKILT 129
Query: 118 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLL 177
SD + GG +P+ A FP LD S Q +VAKD++G+ W F+H++RGTP+RH+
Sbjct: 130 ASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMF 189
Query: 178 TT--GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTN 235
T+ GWS F K+L+ GD V LR E+G+L GIRRAK G PS S +
Sbjct: 190 TSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQG------HIPS---SVIS 240
Query: 236 GSCINPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRAS 295
+C+ +G + + + K F VY P +S
Sbjct: 241 ANCMQ-HGVIASVVNAFKTKCM----------------------------FNVVYKPSSS 271
Query: 296 TPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPW 355
+F + AM + G RF+M FE +D S + GT+ V P W +S W
Sbjct: 272 --QFVISYDKFVDAMNNNYIVGSRFRMQFEGKDFSE-KRYDGTIIGVNDMSP-HWKDSEW 327
Query: 356 RLLQV 360
R L+V
Sbjct: 328 RSLKV 332
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 165/361 (45%), Gaps = 68/361 (18%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPVDFSSSPRIHAL---------ILCRV 61
QLW CAG + IP + V+YFPQG+ E VD S+ ++ L + CRV
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIEL----VDASTREELNELQPICDLPSKLQCRV 82
Query: 62 AAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQS 119
A+ ++ +DE YA+I+L P + + N +P SF K LT S
Sbjct: 83 IAIHLKVENNSDETYAEITLMP---------DTTQVVIPTQSENQFRPLVNSFTKVLTAS 133
Query: 120 DANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTT 179
D + GGF VP+ A P L P Q ++AKD+HG W+FRH YRGTP+RH LTT
Sbjct: 134 DTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTT 189
Query: 180 GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTGGNGLDSSPPSGWTSTTNGSCI 239
GW+ F KKLV GD IVF+R E+G+L +GIRRA+ G + PS S C+
Sbjct: 190 GWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQG------NIPSSIVSI---DCM 240
Query: 240 NPYGGFSLFLKEDENKRNXXXXXXXXXXXXXXXXXXXXXXXXNGQPFEAVYYPRASTPEF 299
+G + N F VY P + +F
Sbjct: 241 R-HGVIA----------------------------SAKHALDNQCIFIVVYKPSIRSSQF 271
Query: 300 CVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPNSPWRLLQ 359
V AM ++ G RF M FE +D S +F GT+ V P W S WR L+
Sbjct: 272 IVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYF-GTIIGVNDFSP-HWKCSEWRSLE 329
Query: 360 V 360
V
Sbjct: 330 V 330
>AT1G34170.2 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 479
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 120/223 (53%), Gaps = 30/223 (13%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAE-----------HSQSPVDFSSSPRIHALILC 59
+LW+ CAG + +P KV+YFPQGH E H + D S R C
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLR------C 78
Query: 60 RVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPAS--FAKTLT 117
RV A+ D TDEVYA+ISL P + + +N +T +P F+K LT
Sbjct: 79 RVVAIDRKVDKNTDEVYAQISLMP---------DTTEVMTHNTTMDTRRPIVYFFSKILT 129
Query: 118 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLL 177
SD + GG +P+ A FP LD S Q +VAKD++G+ W F+H++RGTP+RH+
Sbjct: 130 ASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMF 189
Query: 178 TT--GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
T+ GWS F K+L+ GD V LR E+G+L GIRRAK G
Sbjct: 190 TSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQG 232
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 120/223 (53%), Gaps = 30/223 (13%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAE-----------HSQSPVDFSSSPRIHALILC 59
+LW+ CAG + +P KV+YFPQGH E H + D S R C
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLR------C 78
Query: 60 RVAAVKYLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPAS--FAKTLT 117
RV A+ D TDEVYA+ISL P + + +N +T +P F+K LT
Sbjct: 79 RVVAIDRKVDKNTDEVYAQISLMP---------DTTEVMTHNTTMDTRRPIVYFFSKILT 129
Query: 118 QSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLL 177
SD + GG +P+ A FP LD S Q +VAKD++G+ W F+H++RGTP+RH+
Sbjct: 130 ASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMF 189
Query: 178 TT--GWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
T+ GWS F K+L+ GD V LR E+G+L GIRRAK G
Sbjct: 190 TSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQG 232
>AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);
transcription factor | chr1:16672582-16673952 REVERSE
Length = 222
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 109/208 (52%), Gaps = 19/208 (9%)
Query: 11 QLWHACAGSMVQIPPINSKVFYFPQGHAEHSQSPV-----DFSSSPRIHALILCRVAAVK 65
QLW CAG + IP + KV+YFPQGH E ++ + + + + + CRV A+
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIH 86
Query: 66 YLADSETDEVYAKISLFPLPNNELNFGEEMGICDNNNGNNTEKPA--SFAKTLTQSDANN 123
++ +DE Y +I+L P + + N +P SF K LT SD +
Sbjct: 87 LKVENNSDETYVEITLMP---------DTTQVVIPTENENQFRPIVNSFTKVLTASDTSA 137
Query: 124 GGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWST 183
G FSVP A P LD S P Q ++A D+HG W+F+H YR PR TTGW+
Sbjct: 138 QGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNA 194
Query: 184 FVNQKKLVAGDSIVFLRAESGDLCLGIR 211
F KKLV GD IVF R E+G+L +GIR
Sbjct: 195 FTTSKKLVVGDVIVFARGETGELRVGIR 222
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 74/102 (72%)
Query: 111 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRG 170
SF K LT SD + GGFSV R A P LD + P Q +VA+D+HG W+F+HI+RG
Sbjct: 36 SFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRG 95
Query: 171 TPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRR 212
PRRHLLTTGWSTFV K+LVAGD+ VFLR E+GDL +G+RR
Sbjct: 96 QPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRR 137
>ATMG00940.1 | Symbols: ORF164 | hypothetical protein |
chrM:251403-251897 REVERSE
Length = 164
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 282 NGQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTV-A 340
G PFE VYYP A +F VKA V A+M I W G R KMA ETEDSSRI+WF G V
Sbjct: 76 QGLPFEVVYYPTAGWSDFVVKAEDVEASMAIFWTPGTRVKMAMETEDSSRITWFQGIVFY 135
Query: 341 SVQVADPIRWPNSPWRLLQV-LHFSFLLII 369
+ Q P W SPW + + F+ LI
Sbjct: 136 TYQETGP--WRGSPWNSFRYKIPFTIPLIF 163
>AT3G25730.1 | Symbols: | AP2 domain-containing transcription
factor, putative | chr3:9396505-9397506 FORWARD
Length = 333
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 112 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVA--KDVHGEVWKFRHIYR 169
F KT+T SD +P++ AE FP + + V+ ++ +DV+G+VW+FR+ Y
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 170 GTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGD 205
+ + ++LT GWS FV +K+L AGD I F R+ D
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQD 278
>AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription
factor/ transcription repressor | chr1:4542386-4543420
FORWARD
Length = 344
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 110 ASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVA--KDVHGEVWKFRHI 167
A F K +T SD +P++ AE FP S++ V+ V+ +DV+G+VW+FR+
Sbjct: 186 ALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLP--SSNVSVKGVLLNFEDVNGKVWRFRYS 243
Query: 168 YRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGI 210
Y + + ++LT GWS FV +K L AGD + F R+ D L I
Sbjct: 244 YWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYI 286
>AT1G01030.1 | Symbols: NGA3 | NGA3 (NGATHA3); transcription factor
| chr1:11864-12940 REVERSE
Length = 358
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 107 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRH 166
EK F K +T SD +P+ AE FP LD S + + +D +G++W+FR+
Sbjct: 51 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRY 109
Query: 167 IYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA 201
Y + + +++T GWS FV +KKL AGD + F R
Sbjct: 110 SYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 144
>AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription factor
| chr4:639791-640792 FORWARD
Length = 333
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 112 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVA-KDVHGEVWKFRHIYRG 170
F K LT SD +P+ AE FP D TV+ +D +G++W+FR+ Y
Sbjct: 36 FDKVLTPSDVGKLNRLVIPKQHAENFFPLEDNQNG----TVLDFQDKNGKMWRFRYSYWN 91
Query: 171 TPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA 201
+ + +++T GWS FV +KKL AGD++ F R
Sbjct: 92 SSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
>AT2G36080.1 | Symbols: | DNA-binding protein, putative |
chr2:15148612-15151411 REVERSE
Length = 244
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 107 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQT---VVAKDVHGEVWK 163
EK A F K LT SD +P+ AE FP L +A V+ + +D G+ W+
Sbjct: 33 EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFP-LAAAAADAVEKGLLLCFEDEEGKPWR 91
Query: 164 FRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAES--GDLCLGIRR 212
FR+ Y + + ++LT GWS +V +K L AGD ++F R S G +G RR
Sbjct: 92 FRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>AT2G36080.2 | Symbols: | DNA-binding protein, putative |
chr2:15150890-15151411 REVERSE
Length = 173
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 107 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQT---VVAKDVHGEVWK 163
EK A F K LT SD +P+ AE FP L +A V+ + +D G+ W+
Sbjct: 33 EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFP-LAAAAADAVEKGLLLCFEDEEGKPWR 91
Query: 164 FRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAES--GDLCLGIRR 212
FR+ Y + + ++LT GWS +V +K L AGD ++F R S G +G RR
Sbjct: 92 FRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription factor
| chr2:19261313-19262245 FORWARD
Length = 310
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 106 TEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFR 165
++ F K +T SD +P+ AE FP LD S++ + +D+ G+ W+FR
Sbjct: 29 ADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKGLLLNFEDLTGKSWRFR 87
Query: 166 HIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 200
+ Y + + +++T GWS FV KKL AGD + F R
Sbjct: 88 YSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 122
>AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF THE
ATPASE OF THE VACUOLAR MEMBRANE); DNA binding /
transcription factor/ transcription repressor |
chr1:25880442-25881500 FORWARD
Length = 352
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 112 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVA---KDVHGEVWKFRHIY 168
F K +T SD +P+ AE FP S P V V +DV+G+VW+FR+ Y
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKQHAEKHFPLP--SPSPAVTKGVLINFEDVNGKVWRFRYSY 245
Query: 169 RGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA 201
+ + ++LT GWS FV +K L AGD + F R+
Sbjct: 246 WNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERS 278
>AT1G25560.1 | Symbols: TEM1 | TEM1 (TEMPRANILLO 1); transcription
factor | chr1:8981891-8982976 REVERSE
Length = 361
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 92 GEEMGICDNNNGNNT---EKPASFAKTLTQSDANNGGGFSVPRYCAETIFP----RLDYS 144
G+ G+ GN+ + F KT+T SD +P+ AE FP
Sbjct: 172 GKRSGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMG 231
Query: 145 ADP-PVQTVVA--KDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA 201
+P P + V+ +D G+VW+FR+ Y + + ++LT GWS FV +K L AGD + F R+
Sbjct: 232 MNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERS 291
Query: 202 ESGDLCLGI 210
D L I
Sbjct: 292 TGPDRQLYI 300
>AT2G30470.1 | Symbols: HSI2, VAL1 | HSI2 (HIGH-LEVEL EXPRESSION OF
SUGAR-INDUCIBLE GENE 2); transcription factor/
transcription repressor | chr2:12980904-12984724 REVERSE
Length = 790
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 112 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIY-RG 170
F KTL+ SDA G +P+ CAE FP + S P++ +DV G W F+ Y
Sbjct: 295 FEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKI---QDVRGREWTFQFRYWPN 351
Query: 171 TPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAE-SGDLCLGIRRAK-----RGTG-GNGLD 223
R + G + + L AGD++ F R + G L +G R+A +G G NG
Sbjct: 352 NNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGTS 411
Query: 224 SSPPSGWTSTTNGSCINPYGGFSLFLKE 251
+ S T N IN SL KE
Sbjct: 412 TEDTSSSGVTENPPSINGSSCISLIPKE 439
>AT3G61970.1 | Symbols: NGA2 | NGA2 (NGATHA2); transcription factor
| chr3:22951829-22952728 FORWARD
Length = 299
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 104 NNTEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVA--KDVHGEV 161
++ E+ F K +T SD +P+ AE FP + + + + ++ +D G
Sbjct: 15 SSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNS 74
Query: 162 WKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 200
W+FR+ Y + + +++T GWS FV KKL AGD + F R
Sbjct: 75 WRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 113
>AT5G06250.1 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 267
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 108 KPASFAKTLTQSDANNGGGFSVPRYCAETIFP---------RLDYSADPPVQTVVAKDVH 158
K + F K+LT SD +P+ AE FP D S+ + +D
Sbjct: 42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDES 101
Query: 159 GEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
G+ W+FR+ Y + + ++LT GWS FV K+L GD + F R S L I +RG G
Sbjct: 102 GKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQG 161
Query: 219 GNGLDSSPPSGWTSTTNGSC 238
+ ++ S +++ G+
Sbjct: 162 SSSSVAATNSAVNTSSMGAL 181
>AT5G06250.2 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 282
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 108 KPASFAKTLTQSDANNGGGFSVPRYCAETIFP---------RLDYSADPPVQTVVAKDVH 158
K + F K+LT SD +P+ AE FP D S+ + +D
Sbjct: 42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDES 101
Query: 159 GEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAESGDLCLGIRRAKRGTG 218
G+ W+FR+ Y + + ++LT GWS FV K+L GD + F R S L I +RG G
Sbjct: 102 GKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQG 161
Query: 219 GN 220
+
Sbjct: 162 SS 163
>AT3G11580.2 | Symbols: | DNA-binding protein, putative |
chr3:3650579-3651271 REVERSE
Length = 230
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 107 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRL----------DYSADPPVQTVVAKD 156
++ + F K+LT SD +P+ AE FP D + + +D
Sbjct: 24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83
Query: 157 VHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--ESGDLCLGIRR 212
G+ WKFR+ Y + + ++LT GWS +V K L AGD + F R + L +G RR
Sbjct: 84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRR 141
>AT3G11580.1 | Symbols: | DNA-binding protein, putative |
chr3:3649165-3651271 REVERSE
Length = 267
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 107 EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRL----------DYSADPPVQTVVAKD 156
++ + F K+LT SD +P+ AE FP D + + +D
Sbjct: 24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83
Query: 157 VHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA--ESGDLCLGIRR 212
G+ WKFR+ Y + + ++LT GWS +V K L AGD + F R + L +G RR
Sbjct: 84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRR 141
>AT4G32010.1 | Symbols: HSL1, HSI2-L1, VAL2 | HSL1 (HSI2-LIKE 1);
transcription factor | chr4:15481231-15484897 FORWARD
Length = 780
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 112 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFR-HIYRG 170
F K L+ SDA G +P+ CAE FP + P++ +D+ G+ W F+ +
Sbjct: 286 FEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKI---QDIKGKEWVFQFRFWPN 342
Query: 171 TPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAE-SGDLCLGIRRAKRGTG 218
R + G + + +L AGD++ F R E G L +G R+A T
Sbjct: 343 NNSRMYVLEGVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTA 391