Jatropha Genome Database

JcCB0033501.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033501.30 + phase: 1 /pseudo/partial
         (485 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34930.1 | Symbols:  | disease resistance family protein | ch...    58   1e-08

>AT2G34930.1 | Symbols:  | disease resistance family protein |
           chr2:14737169-14739886 REVERSE
          Length = 905

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 159 LRNCIKLTFLDLSGNTLAINIPIWFGKNXXXXXXXXXXXXXXXRSMPLQLCQLTNVQILD 218
           LRNC  LT +DL GN L   +P W GK                  +P  LC + N++ILD
Sbjct: 683 LRNCSGLTNIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILD 741

Query: 219 LSINNINATIPHHLNNLRAMTNGNSN 244
           LS N I+  IP  ++NL A+  G +N
Sbjct: 742 LSGNKISGPIPKCISNLTAIARGTNN 767