Jatropha Genome Database

JcCB0033401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.20 + phase: 0 /partial
         (176 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75340.1 | Symbols:  | zinc finger (CCCH-type) family protein...   165   1e-41

>AT1G75340.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr1:28269153-28271873 REVERSE
          Length = 435

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 107/175 (61%), Gaps = 9/175 (5%)

Query: 3   FKKELCRNFQRGSCQYGERCKFLHPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFGV 62
            +KELCRNFQRGSC+YGE C+FLHP                               GFGV
Sbjct: 1   MRKELCRNFQRGSCRYGENCRFLHPQQAKPNNPFGFGTQNQQQQQQQQQQNSSNPFGFGV 60

Query: 63  QSKAANDFGNKQQQQFKPFENKWTRFSPISNGGGGSQS-RQPDNQPQAVNHKCTDPESCK 121
           QS      G+ +  QF   +N W+R +    GGG + S +Q   Q Q  +HKCTDP +CK
Sbjct: 61  QSG-----GSSRPNQF---QNTWSRTASTPTGGGAAASTQQTGKQTQPADHKCTDPAACK 112

Query: 122 REIIEDFEHEKPLWKLTCYGHSKKGPCDIFGDVSYEELRAVAYDDAKRGLSLQSI 176
           R + +DF++E+P+WKLTCYGH K  PCD+ GD+SYEELRAVAY++AKRG+ LQSI
Sbjct: 113 RVMQDDFKNERPMWKLTCYGHWKYFPCDVTGDISYEELRAVAYEEAKRGIPLQSI 167