Jatropha Genome Database

JcCB0033401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0033401.10 - phase: 0 
         (753 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58130.1 | Symbols:  | RNA recognition motif (RRM)-containing...   235   7e-62

>AT5G58130.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:23521190-23523766 REVERSE
          Length = 748

 Score =  235 bits (600), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 130/260 (50%), Positives = 155/260 (59%), Gaps = 44/260 (16%)

Query: 10  TRIYVGGLGESVTSDDLCTIFSKIGGDIKAVDIIRTKGRSFAYIDFSPSSHNSLSKLFST 69
            R++VGGLGESV  DDL  IFS +G  + AV+ +RTKGRSFAYIDFSPSS NSL+KLFST
Sbjct: 10  VRLHVGGLGESVGRDDLLKIFSPMGT-VDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFST 68

Query: 70  YNGCVWKGKRLRLEKAKEHYLDRLKQEWAEDAQLXXXXXXXXXXXXXXKNMESFKKPMKE 129
           YNGCVWKG RLRLEKAKEHYL RLK+EW                     +  + K P   
Sbjct: 69  YNGCVWKGGRLRLEKAKEHYLARLKREW---------------EAASSTSDNTIKAPSD- 112

Query: 130 LSSEKKQLRIFFPRLQKLKSLPFSGTGKHRYSFRRVEV-PPLPTHFCDCEEHSGSVYTTE 188
            S     L IFFPRL+K+K +P SGTGKH+YSF+RV V   LP  FCDCEEHS S  T  
Sbjct: 113 -SPPATHLNIFFPRLRKVKPMPLSGTGKHKYSFQRVPVSSSLPRSFCDCEEHSNSSLTPR 171

Query: 189 KKAIPVLEEQGGGMSKEELDMMNSVMNKLFEIENVSATAHSDIVLTKEQESSIKVSDDFQ 248
           +  +  LE    G  + E+++MNSVMNKLFE  NV            E+++ I+      
Sbjct: 172 EIHLHDLEAVNVGRQEAEVNVMNSVMNKLFEKNNVDP----------EEDNEIEA----- 216

Query: 249 SEENEGYSTEDDDNLIINVV 268
                     D DNLIINV 
Sbjct: 217 ----------DQDNLIINVA 226



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 82/181 (45%), Gaps = 32/181 (17%)

Query: 577 ASNETGRGSAWLNKASWTQLVAXXXXXXXXIAQILPGLNFEKQEPVKPDGVIIADSTSCK 636
           ASN++  GS+WL KASWTQLV+        I Q+ P L  +K E     GVI        
Sbjct: 591 ASNKSTGGSSWLQKASWTQLVSDKNTSSFSITQLFPDLTSDKGEAA---GVINNVGNQFS 647

Query: 637 HSDITEKRKSHT----AVDGEMALGFERDRD-VKSTPELSQHMVVGNNDVPAPTDGKYGS 691
           +S+ T      T    +  G +A G   D   V+S  E  Q +           +GK  S
Sbjct: 648 NSNQTASAMKQTDYASSSGGFVAAGVPVDSTPVRSLDENRQRL-----------NGKNVS 696

Query: 692 ATKQAAPPTENIYRSAKKQFDLRTNVGGVLIGESCSFMRTDASLKEWENIKAALSGSRKR 751
                    E     AKK+  ++  VG    G++C+FMR+  SLKEW   K ALS  R++
Sbjct: 697 ---------EGAKLGAKKKI-IKRKVGS---GDTCTFMRSSTSLKEWAKAKKALSEPRRK 743

Query: 752 K 752
           K
Sbjct: 744 K 744