Jatropha Genome Database
- JcCB0032671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0032671.10 + phase: 0
(349 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 340 5e-94
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEA... 94 9e-20
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 59 3e-09
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 5e-09
AT1G53720.1 | Symbols: ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); ... 59 6e-09
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 9e-08
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 54 1e-07
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 54 2e-07
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 2e-07
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 52 5e-07
AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 50 2e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RN... 50 2e-06
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 50 2e-06
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 50 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYT... 50 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,... 50 2e-06
AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucl... 49 4e-06
AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucl... 49 4e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding... 49 5e-06
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18013431-18015376 FORWARD
Length = 333
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 169/262 (64%), Positives = 196/262 (74%), Gaps = 4/262 (1%)
Query: 6 VNSVFYADTYHPIQAGSIDGTDIVPHDNAVYRALLCSSAGLYDPFGDPKVIGDPYCTVFV 65
VN VFYA +YHPIQAGSIDGTD+ PHDN V RALLC +AGLYDP GD K +GDPYCT+FV
Sbjct: 9 VNKVFYATSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYCTLFV 68
Query: 66 GRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAHHS 125
GRLSH TTE++LR+ MSKYGR+KNLRLVR IVTGASRGY FVEYETE+EM R+Y+DAHHS
Sbjct: 69 GRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHS 128
Query: 126 YIDDSEIMVDYNRQQLMPGWIPXXXXXXXXXXKESGQLRFGGRERPFRAPLQSIPLDDLK 185
ID EI+VDYNRQQLMPGWIP KESGQLRFGGR+RPFRAPL+ IP +DLK
Sbjct: 129 LIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPHEDLK 188
Query: 186 RLGIPPPPEGRYMSCFQVPSPPRRNRSSIDREES-SRMRSSIDKXXXXXXXXXXXXXXXY 244
+LGI PPEGRYMS Q+PSPPRR S DREE R +SS+++ Y
Sbjct: 189 KLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYREKSSVER---EEEFKERSSLRSY 245
Query: 245 NKRSSRGKEEHTSKQRSKEREE 266
+ S + ++RSK+REE
Sbjct: 246 HSHRSSAHTHSSHRRRSKDREE 267
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (U1 SMALL NUCLEAR
RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid
binding / nucleotide binding | chr3:18826476-18829492
REVERSE
Length = 427
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%)
Query: 47 YDPFGDPKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAF 106
YDP DP GDPY T+FV RL++ ++E +++ YG +K + LV D +T +GYAF
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183
Query: 107 VEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGWIP 147
+EY R+M+ +YK A ID ++VD R + +P W P
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRP 224
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878497-1879515 FORWARD
Length = 146
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+F+G LS CTTE+ L +A SK G+V ++V D V+ S+G+ FV + + E +++ +
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 123 HHSYIDDSEIMVDYNR 138
+ ++ I VDY +
Sbjct: 96 NGQQLNGRTIFVDYAK 111
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22171332-22172656 FORWARD
Length = 156
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 37 RALLCSSAGLYDPFGDPKV--------IGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVK 88
R L CS+A + F P+ +P +FV LS TT E LR A +++G V
Sbjct: 25 RRLFCSNASRFS-FLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83
Query: 89 NLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAHHSYIDDSEIMVDYNR 138
+ ++V D V+G S+G+ FV Y T + + ++D I +Y R
Sbjct: 84 DAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | CYP59 (CYCLOPHILIN 59); RNA
binding / nucleic acid binding / peptidyl-prolyl
cis-trans isomerase | chr1:20057012-20059508 FORWARD
Length = 506
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 42 SSAGLYDPFGD-PKV-IGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTG 99
SSA + + GD P+ + P +FV +L+ T +E L S++G V + ++RD TG
Sbjct: 222 SSAVVLESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTG 281
Query: 100 ASRGYAFVEYETEREMRRSYKDAHHSYIDDSEIMVDYNRQQLMPGW 145
S YAF+E+E + ++Y ++ IDD I VD++ Q + W
Sbjct: 282 DSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFS-QSVSKLW 326
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27643801-27645386 REVERSE
Length = 181
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 59 PYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRS 118
P ++V LS TTE++LR ++G + ++ +V D V +G+AF+ YETE E ++
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 119 YKDAHHSYIDDSEIMVD 135
+ H ++D I V+
Sbjct: 135 IQGMHGKFLDGRVIFVE 151
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 289
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETERE----MRRS 118
+FVG +S+ T E LR+A SKYG V + +++ D TG SRG+AFV + + E M+
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLD 95
Query: 119 YKDAH 123
+D H
Sbjct: 96 GQDLH 100
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16912511-16913250 REVERSE
Length = 102
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FV RLS TT++SLR+ S +G++K RL+RD T +G+ F+ +++E + R++ K
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 123 HHSYIDDSEIMVD 135
+D I V+
Sbjct: 69 DGKIVDGRLIFVE 81
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 374
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+F+ LS T+E++LR A +G + ++++ D ++ S+GYAF+EY TE + K+
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 123 HHSYIDDSEIMVDYNRQQ 140
+ I+ I+VD + +
Sbjct: 344 NGKIINGWMIVVDVAKTK 361
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:26999606-27001850 FORWARD
Length = 461
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
VFVG + + TEE LR+ + G V + RLV D TG +GY F EY+ E + ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 123 HHSYIDDSEIMVDY 136
I+ ++ VD+
Sbjct: 71 QSYEINGRQLRVDF 84
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T +E L++ S++G V + +++ D +G SRG+ FV ++ E+ MR + ++ +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 69 GKELDGRVITVN 80
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8; RNA
binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T +E L++ S++G V + +++ D +G SRG+ FV ++ E+ MR + ++ +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 69 GKELDGRVITVN 80
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9671953-9673055 FORWARD
Length = 245
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 58 DPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
DP F+G L+ T++ LR A KYG + ++V D +G SRG+ F+ ++ ++ M
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 118 SYKDAHHSYIDDSEIMVD 135
+ + +D I VD
Sbjct: 64 AIAAMNGMDLDGRTITVD 81
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15743112-15744504 REVERSE
Length = 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 63 VFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDA 122
+FV LS TT E L+ A + +G++ + R++ D +G S+G+ FV Y T + ++ +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 123 HHSYIDDSEIMVD 135
+ ++D I VD
Sbjct: 96 NAKFLDGWVIFVD 108
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN RHYTHM,
AND RNA BINDING 2); RNA binding / double-stranded DNA
binding / single-stranded DNA binding |
chr2:9265477-9266316 REVERSE
Length = 159
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 57 GDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMR 116
GD FVG L+ T + +L A ++YG V + +++ D TG SRG+ FV ++ E+ M+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 117 RSYKDAHHSYIDDSEIMVD 135
+ + + +D I V+
Sbjct: 64 DAIEGMNGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9265477-9266316 REVERSE
Length = 176
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 57 GDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMR 116
GD FVG L+ T + +L A ++YG V + +++ D TG SRG+ FV ++ E+ M+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 117 RSYKDAHHSYIDDSEIMVD 135
+ + + +D I V+
Sbjct: 64 DAIEGMNGQDLDGRSITVN 82
>AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucleic
acid binding / nucleotide binding |
chr5:25681849-25683553 REVERSE
Length = 303
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 53 PKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETE 112
P I D Y ++ V ++ TT + L +KYG+V ++ + RD TG SRG+AFV Y+ +
Sbjct: 9 PPDISDTY-SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 113 REMRRSYKDAHHSYIDDSEIMVDY 136
E ++ + +D EI V +
Sbjct: 68 DEAHKAVERLDGRVVDGREITVQF 91
>AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding / nucleic
acid binding / nucleotide binding |
chr5:25681849-25683553 REVERSE
Length = 303
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 53 PKVIGDPYCTVFVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETE 112
P I D Y ++ V ++ TT + L +KYG+V ++ + RD TG SRG+AFV Y+ +
Sbjct: 9 PPDISDTY-SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67
Query: 113 REMRRSYKDAHHSYIDDSEIMVDY 136
E ++ + +D EI V +
Sbjct: 68 DEAHKAVERLDGRVVDGREITVQF 91
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding /
nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 92
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 64 FVGRLSHCTTEESLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRSYKDAH 123
FVG L+ T +E L++ S++G V + +++ D +G SRG+ FV ++ E+ MR + ++ +
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 124 HSYIDDSEIMVD 135
+D I V+
Sbjct: 69 GKELDGRVITVN 80