Jatropha Genome Database

JcCB0031871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0031871.10 - phase: 0 /partial
         (80 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32272.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    88   1e-18

>AT4G32272.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: cellular_component unknown; CONTAINS
          InterPro DOMAIN/s: Protein of unknown function DUF250
          (InterPro:IPR004853); BEST Arabidopsis thaliana protein
          match is: UDP-glucuronic acid/UDP-N-acetylgalactosamine
          transporter-related (TAIR:AT4G31600.1); Has 1302 Blast
          hits to 1300 proteins in 174 species: Archae - 0;
          Bacteria - 4; Metazoa - 376; Fungi - 239; Plants - 567;
          Viruses - 0; Other Eukaryotes - 116 (source: NCBI
          BLink). | chr4:15577195-15579689 REVERSE
          Length = 344

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 7  NNPILPVXXXXXXXXXXXXRLIKGGDEKLFRGSAMTKRGAYAAISYMSCAVLLVMFNKAA 66
          NNP+LPV               KG D++LF+GSAMTKRGAYAA+SYM+CAV+LV+FNKAA
Sbjct: 3  NNPVLPVSDPPLAGENDSDG--KGVDDRLFKGSAMTKRGAYAALSYMACAVMLVLFNKAA 60

Query: 67 LSSYKFPSANVMS 79
          LSSY FP  NV++
Sbjct: 61 LSSYDFPCVNVIT 73