Jatropha Genome Database

JcCB0030711.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.30 + phase: 0 /partial
         (265 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55220.1 | Symbols:  | trigger factor type chaperone family p...   253   7e-68

>AT5G55220.1 | Symbols:  | trigger factor type chaperone family
           protein | chr5:22397677-22400678 FORWARD
          Length = 547

 Score =  253 bits (647), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 112/181 (61%), Positives = 154/181 (85%)

Query: 85  KDRLPADIRVTETVEPNSRLRLTVEVPEAVCDDCYSRVMNEFMKQARVPGFRPGKNVPES 144
           +D+LPAD++VTETV+ NS ++L+VEVPE VC+DCY RV+ EFMK ++VPGFRP   VPE+
Sbjct: 89  EDKLPADLKVTETVQANSSVKLSVEVPEIVCEDCYQRVLTEFMKLSKVPGFRPKTRVPEN 148

Query: 145 ILLSYVGKENVQKATIESVLKRTLPHAMSSVTGRALRDSIRIVTKFSDMEKAYSSLNTLR 204
           I++ +VG++ V +AT+ES+LKRTLPHAM SVTGRAL+DSI+IV+ F DMEKAYS L TL 
Sbjct: 149 IIVGFVGRQYVLRATVESILKRTLPHAMESVTGRALKDSIQIVSSFPDMEKAYSKLKTLS 208

Query: 205 YDIIVDVAPEVKWIPENAYKILKIVVEIDSDVDAQTASEKELRRRQKSLGAMRIVTDRGL 264
           Y+++VDV PE+KW PE+ YK +K+VVE+  ++DA+ A E++LR++ KSLGA++IVT+RGL
Sbjct: 209 YEVVVDVVPELKWNPEDGYKNMKVVVELGDEIDAKKACERQLRQKYKSLGALKIVTERGL 268

Query: 265 Q 265
           Q
Sbjct: 269 Q 269