Jatropha Genome Database

JcCB0030711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030711.20 - phase: 0 
         (187 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55210.1 | Symbols:  | unknown protein | chr5:22396707-223973...    93   8e-20
AT4G22320.1 | Symbols:  | unknown protein | chr4:11793129-117945...    85   2e-17

>AT5G55210.1 | Symbols:  | unknown protein | chr5:22396707-22397374
           REVERSE
          Length = 168

 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 86/168 (51%), Gaps = 18/168 (10%)

Query: 1   MEGVGSRLGRASSRY-GPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXXXX 59
           MEGVGSRL R SSRY GP+ATA VF+G VRKWKKKW                        
Sbjct: 1   MEGVGSRLSRTSSRYSGPAATA-VFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRNNSNN 59

Query: 60  XXXTTNSRLLLCRWTPLSPADATS---------EEPPKRKFRYTPIVVLEEEQRKAAKQV 110
                +  LLL +WTPL+ A  T+         EE PKR+FRY PI +LE  +    K +
Sbjct: 60  SNSPHH--LLLHKWTPLTSATVTASDANGSGETEESPKRRFRYAPIAMLEHRE----KVI 113

Query: 111 DHEAKTDGTNQFTALHP-SKNDELNNDTALKTETQDSNVSNLDLDLCL 157
             +++ + T +F    P  K  EL+ +     +T+++   NL+L LCL
Sbjct: 114 SKDSEIEETEEFDTESPLPKAVELDMNLTDSDQTKEAKTGNLNLGLCL 161


>AT4G22320.1 | Symbols:  | unknown protein | chr4:11793129-11794596
           REVERSE
          Length = 238

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 66/131 (50%), Gaps = 29/131 (22%)

Query: 1   MEGVGSRLGRASSRYGPSATATVFNGPVRKWKKKWXXXXXXXXXXXXXXXXXXXXXX--- 57
           MEGVG+RLGR+S+RYGP   ATVF GPVRKWKKKW                         
Sbjct: 1   MEGVGARLGRSSTRYGP---ATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASV 57

Query: 58  ----XXXXXTTNSRLLLCRWTPL---------------SPADAT----SEEPPKRKFRYT 94
                    +  S LLL +W PL               SP++ T    +E+PP+R+F+Y 
Sbjct: 58  VNGGSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYV 117

Query: 95  PIVVLEEEQRK 105
           PI VLEE++++
Sbjct: 118 PIAVLEEQKKE 128