Jatropha Genome Database

JcCB0030351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0030351.10 - phase: 2 /TE/pseudo/partial
         (711 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18560.1 | Symbols:  | DNA binding / protein dimerization | c...    75   2e-13
AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928 F...    69   9e-12

>AT1G18560.1 | Symbols:  | DNA binding / protein dimerization |
           chr1:6385614-6388005 FORWARD
          Length = 690

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/384 (19%), Positives = 151/384 (39%), Gaps = 41/384 (10%)

Query: 310 FFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKENNKRPKRF 369
           F +I CA   LN  + +GL  +   IS +++    L    ++   + +      +   + 
Sbjct: 300 FCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKL 359

Query: 370 PRDVPTRWNSTYELLNESFSYKELLCFFVTNNIEDI-------NLYPQNWEICAKILDIL 422
           P D  +RW+  Y+++N      + L   +  N + +       ++      I    LD L
Sbjct: 360 PIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLD-L 418

Query: 423 KIFNDATYKFSGVYYPTSNLFLPMCINI----VTALQEFQNDDLLKDCIFSMKKKWLSYF 478
             F+  T         T  L L    NI     T  +   N D L+ C  SM +K  SY 
Sbjct: 419 DSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYN 478

Query: 479 KNIPPLYL-VAIIFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVVMHEVKQNIMQLYN 537
             +  ++  +  I DPR + +                + + +N+   + E + + ++ Y+
Sbjct: 479 TQVCNVFTYITAILDPRIKTEY---------------IPETINLESYIDEARSHFIRNYS 523

Query: 538 EFXXXXXXXXXXXXXXXXNIPQFSTQRVSGVGVAQQVLLQRQKRTRESSSISEFDNYLTT 597
                               PQ   +    +  A+++  ++++ +  ++ + E   YL+ 
Sbjct: 524 SSHFTSSMTSGYR-------PQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSE 576

Query: 598 SFEFSDDYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDET 657
           S             +LDWW  ++  +P LS +A+  LA   ++ A E+ F   G  +D+ 
Sbjct: 577 SI------VPMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQ 630

Query: 658 RSRMTPDSLEAQACVDDWTKAELR 681
           +  M  DS ++  C+  W +A ++
Sbjct: 631 KYCMPHDSTQSVICIRSWIEAGMK 654


>AT3G42170.1 | Symbols:  | DNA binding | chr3:14321838-14323928
           FORWARD
          Length = 696

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 152/388 (39%), Gaps = 59/388 (15%)

Query: 306 IGGKFFHIRCACHILNLCVQDGLKILDSFISPIKKAISYLWTHPQVMKSWAKFCKENNKR 365
           + G+     C         +D L+     I  I+ ++ ++ T     + + +  KE  + 
Sbjct: 327 LDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTEL-KEQLQV 385

Query: 366 P--KRFPRDVPTRWNSTYELLNESFSYKELLCFFVTNNIEDINLYP--QNWEICAKILDI 421
           P  K    D  T+WN+TY +L  +   KE+     T +  D    P  ++W     +   
Sbjct: 386 PSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTAD-PDYKKPPSAEDWRHVEALCTF 444

Query: 422 LKIFNDATYKFSGVYYPTSNLFLPMCINIVTALQEF--QNDDLLKDCIFSMKKKWLSYFK 479
           LK   +A         P++  F        + L       D  +     +M++K   Y++
Sbjct: 445 LKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWR 504

Query: 480 NIPPLYLVAIIFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVVMHEVKQNIMQLYNEF 539
           +   +  +A++ DPR +M  L ++   +  +   D   N+        V   I +L+ E+
Sbjct: 505 DCSLVLAMAVVMDPRFKMK-LVEF--SFSKIFGEDAGKNIKT------VDDGIHELFTEY 555

Query: 540 XXXXXXXXXXXXXXXXNIPQFSTQRVSGVGVAQQVLLQRQKRTRESSSISEFDNYL--TT 597
                            +P  S Q  +  G              ++  +S+FD Y+  TT
Sbjct: 556 MA---------------LP--SPQNTTSEG-------------GKADGLSDFDTYIMETT 585

Query: 598 SFEFS---DDYADA-------DFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAF 647
                   D Y D        +F +LDWW ++   +P LS +A+ IL+ PVS  A +  F
Sbjct: 586 GQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVF 645

Query: 648 SQGGNILDETRSRMTPDSLEAQACVDDW 675
                 +DE ++ + P+++EA  C  +W
Sbjct: 646 DMEPREMDEYKTSLRPETVEALICAREW 673