Jatropha Genome Database

JcCB0028581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028581.10 + phase: 2 /pseudo/partial
         (323 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25070.1 | Symbols:  | unknown protein | chr5:8641261-8643471...   148   6e-36

>AT5G25070.1 | Symbols:  | unknown protein | chr5:8641261-8643471
           REVERSE
          Length = 736

 Score =  148 bits (373), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 132/226 (58%), Gaps = 22/226 (9%)

Query: 114 REDKVRLAKAEEKLIEDVRMLQQDVSSLRASLQ------------------RIFFIDKRV 155
           RE++ +L   EEKL E+V+ LQ++VSS R  L+                  +I FI+KR+
Sbjct: 509 REERAKLVNIEEKLSEEVQKLQEEVSSTRELLKERSSKKSIIQQNITSFMDKIMFIEKRM 568

Query: 156 PELESEKKVAASTRNFKEAARIAAEAKSLYVEKDGVQIDLERTTAELEKLEEDMKNTVSR 215
           PELE+EKKVAASTRNFKEA RIAAEAKSL +EKD  Q++  +  AELEK E +++ T+ R
Sbjct: 569 PELEAEKKVAASTRNFKEAGRIAAEAKSLNLEKDKTQMETGKANAELEKAEHEIEETIKR 628

Query: 216 LLDTEHLISSKEKEVAMARFQRLLLIAGAATAERVSALELGDSXXXXXXXXXXXXXXXXX 275
           L + E LI SKEKE+A++RFQRL + +G A AER +ALEL D                  
Sbjct: 629 LQEIEKLILSKEKELAISRFQRLRIDSGTAKAERSAALELSDLEEANLLLEEAQEAESEA 688

Query: 276 XXXQPIYNFNKEQFPNLPKH----FISMELVFNLGRKQLADLAASV 317
              +      +E+           F+SMEL+  +G K+L +L  SV
Sbjct: 689 EKLKLTGGLKEEEEEEEKAKSNEVFVSMELIATVGLKKLQELVESV 734