Jatropha Genome Database

JcCB0028471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028471.20 + phase: 0 /partial
         (54 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4 (EXORIBON...    85   1e-17
AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3' ex...    79   4e-16
AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1...    62   9e-11

>AT1G54490.1 | Symbols: AIN1, EIN5, XRN4, ATXRN4 | XRN4
          (EXORIBONUCLEASE 4); 5'-3' exonuclease/ 5'-3'
          exoribonuclease/ nucleic acid binding |
          chr1:20350300-20356650 FORWARD
          Length = 947

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 42/51 (82%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVPAFYRWLADRYP +I DVVEEEP +   G  IP+D++RPNPNG EFDN
Sbjct: 1  MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDN 51


>AT5G42540.1 | Symbols: XRN2 | XRN2 (EXORIBONUCLEASE 2); 5'-3'
          exonuclease/ 5'-3' exoribonuclease/ nucleic acid
          binding | chr5:17007513-17014534 FORWARD
          Length = 1012

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKE-DANGVSIPIDVSRPNPNGVEFDN 51
          MGVP+FYRWL  RYPL I +V+EEEP E +  GV+IPID S+PNPNG E+DN
Sbjct: 1  MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDN 52


>AT1G75660.1 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease |
          chr1:28408289-28414825 FORWARD
          Length = 1020

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDANGVSIPIDVSRPNPNGVEFDN 51
          MGVP+FYRWLA++YPL + D V EE   +  G+ IP+D S+PNPN +E+DN
Sbjct: 1  MGVPSFYRWLAEKYPLLVAD-VIEEEPVEIEGIKIPVDTSKPNPNNLEYDN 50