Jatropha Genome Database

JcCB0028391.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028391.20 + phase: 0 /partial
         (218 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60850.1 | Symbols:  | unknown protein | chr3:22482053-224839...   241   2e-64

>AT3G60850.1 | Symbols:  | unknown protein | chr3:22482053-22483999
           FORWARD
          Length = 648

 Score =  241 bits (616), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/227 (56%), Positives = 146/227 (64%), Gaps = 12/227 (5%)

Query: 1   MNPHKTEHDLFHNHRHDLGXXXXXXXXXXXXXXXSIHD-------DLSLPEIVLFRXXXX 53
           MN HKTE  LFH+H  DL                  HD         SLPE +LFR    
Sbjct: 1   MNTHKTEEGLFHHH--DLDPTADILVQSPPSILHHHHDHNSEVDPAFSLPEFILFRSSPS 58

Query: 54  XXXXXXXXXXXXXLIHPT---HSSSKSIVSGGTHAPAYINPEPHISSQFYTFNAESHSLM 110
                         +        SS S VS       +I+P+PHISSQFYTFNA SHSLM
Sbjct: 59  GDSPGLSSDEQDDSLTGNPQIADSSNSRVSSAGRDGLFISPDPHISSQFYTFNAASHSLM 118

Query: 111 IRCILEHRLATPDEIRAATPGSVLKSWRAVWKDRNEDTAYVTGWKRIQEKLTAQVDPASG 170
            RC+ E RLATP EIR ATP SVLKSWRAVWKDRNE+TAY+T WKRIQ+KLT+++DPA+G
Sbjct: 119 CRCLREGRLATPAEIRIATPRSVLKSWRAVWKDRNEETAYLTAWKRIQDKLTSRLDPATG 178

Query: 171 NEFLCFKNNSQQFVSHINQWQDIVMSFHGDADLKHLGLRETIERINK 217
           NEFLCFKNNSQQFVSHINQWQDIVM FH D DLKHLG +ETI+RI +
Sbjct: 179 NEFLCFKNNSQQFVSHINQWQDIVMGFHADGDLKHLGQKETIDRIKQ 225