Jatropha Genome Database

JcCB0028271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0028271.10 - phase: 0 /pseudo/partial
         (177 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20720.1 | Symbols:  | ATP binding / ATP-dependent DNA helica...   194   2e-50
AT1G20750.1 | Symbols:  | helicase-related | chr1:7203302-720899...   143   6e-35
AT2G05635.1 | Symbols:  | ATP binding / ATP-dependent DNA helica...    80   7e-16
AT1G79950.1 | Symbols:  | helicase-related | chr1:30073580-30079...    79   1e-15
AT1G79890.1 | Symbols:  | helicase-related | chr1:30048655-30052...    58   3e-09

>AT1G20720.1 | Symbols:  | ATP binding / ATP-dependent DNA helicase/
           ATP-dependent helicase/ DNA binding / hydrolase, acting
           on acid anhydrides, in phosphorus-containing anhydrides
           / nucleic acid binding | chr1:7185658-7192794 REVERSE
          Length = 1175

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 96/115 (83%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VY IGG+QVEFPYQPYGTQLAFM RVISTLDRAQR+GHCHALLESPTGTGKSLSLLCS L
Sbjct: 26  VYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVL 85

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNVDPPQT 133
           AWQQNYK +    NL+ SK  PEA TDPL HGGGFIPETQPS  P S NV+  +T
Sbjct: 86  AWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAET 140


>AT1G20750.1 | Symbols:  | helicase-related | chr1:7203302-7208998
           REVERSE
          Length = 1179

 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 81/112 (72%), Gaps = 19/112 (16%)

Query: 19  VYHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTL 78
           VY IGG+QVEFPYQPYGTQLAFM RVISTLDRAQR+GH HALLESPTGTGKSLSLLCS L
Sbjct: 26  VYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHSHALLESPTGTGKSLSLLCSVL 85

Query: 79  AWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNVDP 130
           AWQ++YK ++ + NL+ SK                   TQPS I  S NV+P
Sbjct: 86  AWQKSYKSRFPNGNLSHSK-------------------TQPSDIAGSSNVEP 118


>AT2G05635.1 | Symbols:  | ATP binding / ATP-dependent DNA helicase/
           DNA binding | chr2:2089484-2090454 FORWARD
          Length = 146

 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 43/65 (66%)

Query: 69  KSLSLLCSTLAWQQNYKFKYQHANLTPSKPNPEAMTDPLGHGGGFIPETQPSSIPPSGNV 128
           +S +  CS LAWQQNYK +    NLT SK  PEA TDPL HGGGFIPETQ    P S NV
Sbjct: 22  QSFNTSCSVLAWQQNYKSRLLKGNLTHSKAAPEAATDPLNHGGGFIPETQQRDTPASINV 81

Query: 129 DPPQT 133
           +  +T
Sbjct: 82  EKAET 86


>AT1G79950.1 | Symbols:  | helicase-related | chr1:30073580-30079537
           FORWARD
          Length = 1040

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 5/64 (7%)

Query: 20  YHIGGIQVEFPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLA 79
           Y I GI VEFP++ Y +Q+ +M RVI +L     +  CHALLESPTGTGK+L LLC+TLA
Sbjct: 49  YSIRGINVEFPFEAYQSQIIYMDRVIESL-----QNKCHALLESPTGTGKTLCLLCATLA 103

Query: 80  WQQN 83
           W+++
Sbjct: 104 WRKS 107


>AT1G79890.1 | Symbols:  | helicase-related |
          chr1:30048655-30052203 FORWARD
          Length = 882

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 29 FPYQPYGTQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSTLAWQQNYKFK 87
          FPY+PY  Q+ FM  +   LD+        ++LESPTGTGKSLS++CS L W  + K K
Sbjct: 10 FPYKPYSIQIDFMNALYQFLDKGGV-----SMLESPTGTGKSLSIICSALQWLTDRKEK 63