Jatropha Genome Database

JcCB0027461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027461.10 - phase: 0 /partial
         (55 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52560.1 | Symbols: ATUSP | ATUSP (ARABIDOPSIS THALIANA UDP-S...    85   9e-18

>AT5G52560.1 | Symbols: ATUSP | ATUSP (ARABIDOPSIS THALIANA
           UDP-SUGAR PYROPHOSPHORYLASE);
           UTP-monosaccharide-1-phosphate uridylyltransferase/
           UTP:arabinose-1-phosphate uridylyltransferase/
           UTP:galactose-1-phosphate uridylyltransferase/
           UTP:glucose-1-phosphate uridylyltransferase/ UTP:xy |
           chr5:21331230-21334573 FORWARD
          Length = 614

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 1   VKVGGSVQNKGWIIESVDYKDTSVPEEIRIRGFRIKKIEQLEKHYSEPGKFDLK 54
           VK+GG ++N GW +ESVDYKDTSVPEEIRIRGFR  K+EQLEK  ++PGKF ++
Sbjct: 560 VKLGGLIKNNGWTMESVDYKDTSVPEEIRIRGFRFNKVEQLEKKLTQPGKFSVE 613