Jatropha Genome Database
- JcCB0027381.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0027381.10 - phase: 0 /partial
(137 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10840.1 | Symbols: | endomembrane protein 70, putative | ch... 217 2e-57
AT5G25100.1 | Symbols: | endomembrane protein 70, putative | ch... 203 3e-53
AT2G24170.1 | Symbols: | endomembrane protein 70, putative | ch... 194 2e-50
AT3G13772.1 | Symbols: | endomembrane protein 70, putative | ch... 166 6e-42
AT1G55130.1 | Symbols: | endomembrane protein 70, putative | ch... 161 1e-40
AT4G12650.1 | Symbols: | LOCATED IN: integral to membrane, Golg... 105 1e-23
AT5G35160.1 | Symbols: | LOCATED IN: integral to membrane, Golg... 78 2e-15
AT1G08350.2 | Symbols: | endomembrane protein 70 family protein... 73 6e-14
AT2G01970.1 | Symbols: | endomembrane protein 70, putative | ch... 68 2e-12
AT1G14670.1 | Symbols: | endomembrane protein 70, putative | ch... 67 3e-12
AT5G37310.1 | Symbols: | LOCATED IN: integral to membrane, Golg... 61 2e-10
AT1G10950.1 | Symbols: | endomembrane protein 70, putative | ch... 57 3e-09
>AT5G10840.1 | Symbols: | endomembrane protein 70, putative |
chr5:3424910-3427797 REVERSE
Length = 648
Score = 217 bits (553), Expect = 2e-57, Method: Composition-based stats.
Identities = 99/132 (75%), Positives = 110/132 (83%)
Query: 4 RGGRSLPLSATICAALAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPY 63
R R + S+ AL FL+ IHG H FYLPGVAP+DF KGDELKVKVNKLTS KTQLPY
Sbjct: 7 RSSRRILESSGCAIALIFLLFIHGAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPY 66
Query: 64 SYYSLPYCRPTKIVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEF 123
SYYSLP+CRP+KIVDS ENLGEVLRGDRIEN+PY FKMRE +MCNI+ R+ LDAKT K F
Sbjct: 67 SYYSLPFCRPSKIVDSTENLGEVLRGDRIENAPYSFKMREAQMCNILGRVTLDAKTAKAF 126
Query: 124 KERIDDEYRVNM 135
KE+IDDEYRVNM
Sbjct: 127 KEKIDDEYRVNM 138
>AT5G25100.1 | Symbols: | endomembrane protein 70, putative |
chr5:8648374-8651015 REVERSE
Length = 644
Score = 203 bits (516), Expect = 3e-53, Method: Composition-based stats.
Identities = 91/121 (75%), Positives = 103/121 (85%)
Query: 15 ICAALAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPT 74
I ++ L+ IH H FYLPGVAP+DF KGDELKVKVNKLTS KTQLPYSYYSLP+CRP
Sbjct: 12 ILGSVILLLSIHVAHSFYLPGVAPQDFEKGDELKVKVNKLTSIKTQLPYSYYSLPFCRPK 71
Query: 75 KIVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVN 134
KIVDS ENLGEVLRGDRIEN+PY FKMRE +MCN++ R+ LDAK+ K FKE+IDDEYRVN
Sbjct: 72 KIVDSTENLGEVLRGDRIENAPYSFKMREAQMCNVLGRVMLDAKSAKAFKEKIDDEYRVN 131
Query: 135 M 135
M
Sbjct: 132 M 132
>AT2G24170.1 | Symbols: | endomembrane protein 70, putative |
chr2:10274307-10276894 REVERSE
Length = 637
Score = 194 bits (493), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/107 (82%), Positives = 93/107 (86%)
Query: 29 HCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTKIVDSAENLGEVLR 88
H FYLPGVAP+DF GD L VKVNKLTSTKTQLPYSYYSLPYCRP IVDSAENLGEVLR
Sbjct: 22 HGFYLPGVAPQDFQMGDALMVKVNKLTSTKTQLPYSYYSLPYCRPEHIVDSAENLGEVLR 81
Query: 89 GDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
GDRIENSP+VFKMRE +MC VCR+KLD KT K FKE+I DEYRVNM
Sbjct: 82 GDRIENSPFVFKMRESQMCAAVCRVKLDKKTAKAFKEKIADEYRVNM 128
>AT3G13772.1 | Symbols: | endomembrane protein 70, putative |
chr3:4521712-4524394 REVERSE
Length = 641
Score = 166 bits (419), Expect = 6e-42, Method: Composition-based stats.
Identities = 74/105 (70%), Positives = 86/105 (81%)
Query: 31 FYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTKIVDSAENLGEVLRGD 90
FYLPGVAP DF KGD L VKVNKL+STKTQLPY YY L YC+P KI+++AENLGEVLRGD
Sbjct: 28 FYLPGVAPRDFQKGDPLYVKVNKLSSTKTQLPYDYYYLNYCKPPKILNNAENLGEVLRGD 87
Query: 91 RIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
RIENS Y F+M E + C + CR+KL+A + K FKE+IDDEYR NM
Sbjct: 88 RIENSVYTFQMLEDQPCKVGCRVKLNADSTKNFKEKIDDEYRANM 132
>AT1G55130.1 | Symbols: | endomembrane protein 70, putative |
chr1:20569654-20572266 FORWARD
Length = 637
Score = 161 bits (408), Expect = 1e-40, Method: Composition-based stats.
Identities = 73/125 (58%), Positives = 93/125 (74%), Gaps = 3/125 (2%)
Query: 11 LSATICAALAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPY 70
+S T+ + F +H FYLPGVAP DF KGD L VKVNKL+STKTQLPY +Y L Y
Sbjct: 7 ISGTLLLSFLFFSTLHA---FYLPGVAPRDFQKGDPLYVKVNKLSSTKTQLPYDFYYLNY 63
Query: 71 CRPTKIVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDE 130
C+P KI+++ ENLGEVLRGDRIENS Y F+M E + C + CR+++DA++ K F+E+ID E
Sbjct: 64 CKPPKILNTGENLGEVLRGDRIENSVYTFEMLEDQPCRVGCRVRVDAESAKNFREKIDYE 123
Query: 131 YRVNM 135
YR NM
Sbjct: 124 YRANM 128
>AT4G12650.1 | Symbols: | LOCATED IN: integral to membrane, Golgi
apparatus, plasma membrane, vacuole; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF)
(InterPro:IPR004240); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G35160.1); Has 983
Blast hits to 980 proteins in 161 species: Archae - 0;
Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228;
Viruses - 0; Other Eukaryotes - 177 (source: NCBI
BLink). | chr4:7468207-7470165 REVERSE
Length = 652
Score = 105 bits (261), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 31 FYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTK-IVDSAENLGEVLRG 89
FYLPG + GD + KVN LTS +T+LP+SYYSLPYC+P + I SAENLGE+L G
Sbjct: 21 FYLPGSYMHTYSDGDSIFAKVNSLTSIETELPFSYYSLPYCQPLEGIKKSAENLGELLMG 80
Query: 90 DRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
D+I+NS Y F+MR + + L+ VK K+R + Y+VNM
Sbjct: 81 DQIDNSAYRFRMRTNESLYLCTTSPLNEHEVKLLKQRTRELYQVNM 126
>AT5G35160.1 | Symbols: | LOCATED IN: integral to membrane, Golgi
apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nonaspanin (TM9SF) (InterPro:IPR004240); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins
in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478;
Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes
- 182 (source: NCBI BLink). | chr5:13414945-13416921
FORWARD
Length = 630
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 61/117 (52%), Gaps = 28/117 (23%)
Query: 19 LAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKTQLPYSYYSLPYCRPTKIVD 78
LA L++I FYLPG P + GD L VK D
Sbjct: 12 LAILLVIQSSFGFYLPGSYPHKYEVGDYLNVK---------------------------D 44
Query: 79 SAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRL-KLDAKTVKEFKERIDDEYRVN 134
SAENLGE+L GDRIENSPY F+M + + +C+ KL A ++K K+RID+ Y+VN
Sbjct: 45 SAENLGELLMGDRIENSPYRFRMFKNESEIFLCQTDKLSADSLKLLKKRIDEMYQVN 101
>AT1G08350.2 | Symbols: | endomembrane protein 70 family protein |
chr1:2632970-2635605 REVERSE
Length = 589
Score = 72.8 bits (177), Expect = 6e-14, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 18 ALAFLILIHGGHCFYLPGVAPEDFVKGDELKVKVNKLTSTKT-QLPYSYYSLPYCRPTKI 76
AL F I I G + + GD + + VNK+ Y YY LP+CR +
Sbjct: 14 ALTFWIGIGSG--------SSNHYNAGDHVPLFVNKVGPLHNPSETYQYYDLPFCRRGPV 65
Query: 77 VDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNMY 136
++ E LGEVL GDR+ +S Y K RE K ++CR +L + + F++ I +Y MY
Sbjct: 66 IEKQETLGEVLNGDRLMSSLYKLKFREDKTHFVLCRKRLTSSDIARFRDIIAQDYYFQMY 125
>AT2G01970.1 | Symbols: | endomembrane protein 70, putative |
chr2:452197-454819 REVERSE
Length = 592
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 22 LILIHGGHCFYLPGVAPED-----FVKGDELKVKVNKLTSTKT-QLPYSYYSLPYCRPTK 75
L+L G F G D + GD + + NK+ Y Y+ LP+C P
Sbjct: 7 LLLFIGALIFSGAGTVRSDASDHRYKDGDSVPLYANKVGPFHNPSETYRYFDLPFCIPEG 66
Query: 76 IVDSAENLGEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNM 135
+ D E LGEVL GDR+ ++PY R++K + C+ KL + V+ F+ ++ +Y M
Sbjct: 67 VKDKKEALGEVLNGDRLVSAPYKLNFRDEKDSEVYCKKKLSREEVEHFRRAVEKDYYFQM 126
Query: 136 Y 136
Y
Sbjct: 127 Y 127
>AT1G14670.1 | Symbols: | endomembrane protein 70, putative |
chr1:5037669-5040199 FORWARD
Length = 592
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 43 KGDELKVKVNKLTSTKT-QLPYSYYSLPYCRPTKIVDSAENLGEVLRGDRIENSPYVFKM 101
+GD + + NK+ Y Y+ LP+C P + + E LGEVL GDR+ ++PY
Sbjct: 33 EGDTVPLYANKVGPFHNPSETYRYFDLPFCIPEGVKEKKEALGEVLNGDRLVSAPYKLNF 92
Query: 102 REQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNMY 136
R++K + C KL + VK+F++ ++ +Y MY
Sbjct: 93 RDEKESEVYCNKKLSKEEVKQFRKAVEKDYYFQMY 127
>AT5G37310.1 | Symbols: | LOCATED IN: integral to membrane, Golgi
apparatus, plant-type cell wall; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Nonaspanin (TM9SF)
(InterPro:IPR004240); BEST Arabidopsis thaliana protein
match is: endomembrane protein 70, putative
(TAIR:AT1G14670.1); Has 1019 Blast hits to 986 proteins
in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444;
Fungi - 148; Plants - 242; Viruses - 0; Other Eukaryotes
- 185 (source: NCBI BLink). | chr5:14772836-14776093
REVERSE
Length = 593
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 32 YLPGVAP-------EDFVKGDELKVKVNKLTSTKT-QLPYSYYSLPYCRPTKIVDSAENL 83
+L GV+P + GD++ + NK+ Y Y+ LP+C + + E L
Sbjct: 16 FLYGVSPVISDGSDHRYKVGDDVPLYANKVGPFHNPSETYRYFDLPFCSSAPVKEKKEAL 75
Query: 84 GEVLRGDRIENSPYVFKMREQKMCNIVCRLKLDAKTVKEFKERIDDEYRVNMY 136
GEVL GDR+ ++PY + +K + CR +L + V +F++ I +Y MY
Sbjct: 76 GEVLNGDRLVSAPYKLEFLGEKNSEVACRKRLSREDVAKFRDVIAKDYYFQMY 128
>AT1G10950.1 | Symbols: | endomembrane protein 70, putative |
chr1:3659322-3663622 FORWARD
Length = 589
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 45 DELKVKVNKLTS-TKTQLPYSYYSLPYCRPT-KIVDSAENLGEVLRGDRIENSPYVFKMR 102
+++ + VNK+ Q Y+YYSLP+CRP+ V LGEVL G+ + +S K
Sbjct: 35 EQVTLWVNKVGPYNNPQETYNYYSLPFCRPSGNNVHKWGGLGEVLGGNELIDSEIAIKFM 94
Query: 103 EQKMCNIVCRLKLDAKTVKEFKERIDDEY 131
+ +++C L+LD VK FK+ I+ Y
Sbjct: 95 KNVERSVICPLELDEAKVKHFKDAIESSY 123