Jatropha Genome Database

JcCB0027171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0027171.10 + phase: 0 /partial
         (172 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20980.1 | Symbols: MCM10 | MCM10 | chr2:9011654-9013856 REVERSE   134   4e-32

>AT2G20980.1 | Symbols: MCM10 | MCM10 | chr2:9011654-9013856 REVERSE
          Length = 396

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 106/177 (59%), Gaps = 28/177 (15%)

Query: 6   RRQGIYCRYHKSKASEVYSTTRTELRGGNLKTAFRDTLKSQGIYLVDPLSDKTNINKPVQ 65
           +RQG +C+ HK  AS+ ++T RTEL+GGNL+TAFRD LKSQGIY V+P +D++   K  Q
Sbjct: 237 KRQGAFCKIHKLNASDKFATMRTELKGGNLRTAFRD-LKSQGIYTVEPPADRSGNKKTTQ 295

Query: 66  PLKLLSVEGLKKALSNADKVTTNTFSQGIRFLNEITGLILLTLVVDTNSSSGAMKLSTMK 125
           P+++LSVEGL+KALS ADKVT N  SQGIRFLNE   +       + N  S A+  ST K
Sbjct: 296 PVRVLSVEGLRKALSGADKVTPNVHSQGIRFLNE---MARQKASKNVNKKSEAVNKSTEK 352

Query: 126 VDPSILXXXXXXXXXXXTDQGQVSAE----KAKHGK-------GKMIELDIYGSDEE 171
              S             T + QV+ E    K +H K       GKM+ LD   SDEE
Sbjct: 353 RKAS-------------TKETQVNGEPKRKKTEHRKETPEISTGKMMLLDFCSSDEE 396