Jatropha Genome Database

JcCB0026071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0026071.10 - phase: 0 
         (171 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38410.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   196   5e-51
AT1G67090.1 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CA...   195   1e-50
AT5G38410.3 | Symbols:  | ribulose bisphosphate carboxylase smal...   194   3e-50
AT5G38430.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   193   4e-50
AT5G38420.1 | Symbols:  | ribulose bisphosphate carboxylase smal...   192   6e-50
AT5G38410.2 | Symbols:  | ribulose bisphosphate carboxylase smal...   187   2e-48
AT1G67090.2 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE CA...    88   3e-18

>AT5G38410.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 181

 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 122/174 (70%), Gaps = 8/174 (4%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++TS   A   + + GLK+++A   FP     + +  ++ SNG R+ CMK W P
Sbjct: 5   MLSSAAVVTSPAQATMVAPFTGLKSSAA---FPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRY 115
           I  KKFETLSYLP LSD  +AK +DY+++  WIPC+EF+ E G V RE+   PGYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 116 WTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           WT+WKLP+FGC DSAQVL E+ ECKK YP A+IR + FDN +Q QC+SFI  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>AT1G67090.1 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE
           CARBOXYLASE SMALL CHAIN 1A); copper ion binding /
           ribulose-bisphosphate carboxylase |
           chr1:25048465-25049249 REVERSE
          Length = 180

 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 124/174 (71%), Gaps = 8/174 (4%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++ S   A   + + GLK+++A   FPA    + +  ++ SNG R++CM+ W P
Sbjct: 5   MLSSATMVASPAQATMVAPFNGLKSSAA---FPATRKANNDITSITSNGGRVNCMQVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRY 115
           I  KKFETLSYLP L+D  +AK +DY+I+  WIPC+EF+ E G V RE+   PGYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRY 121

Query: 116 WTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           WT+WKLP+FGC DSAQVL E+ ECKK YPNA+IR + FDN +Q QC+SFI  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>AT5G38410.3 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 186

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 13/179 (7%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++TS   A   + + GLK+++A   FP     + +  ++ SNG R+ CMK W P
Sbjct: 5   MLSSAAVVTSPAQATMVAPFTGLKSSAA---FPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EV-----GHVRRENSRMPGY 110
           I  KKFETLSYLP LSD  +AK +DY+++  WIPC+EF+ EV     G V RE+   PGY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGY 121

Query: 111 YDGRYWTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           YDGRYWT+WKLP+FGC DSAQVL E+ ECKK YP A+IR + FDN +Q QC+SFI  KP
Sbjct: 122 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 180


>AT5G38430.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) |
           chr5:15384350-15385155 REVERSE
          Length = 181

 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 122/174 (70%), Gaps = 8/174 (4%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++TS   A   + + GLK++++   FP     + +  ++ SNG R+ CMK W P
Sbjct: 5   MLSSAAVVTSPAQATMVAPFTGLKSSAS---FPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRY 115
           I  KKFETLSYLP L+D  +AK +DY+++  WIPC+EF+ E G V RE+   PGYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 116 WTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           WT+WKLP+FGC DSAQVL E+ ECKK YP A+IR + FDN +Q QC+SFI  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>AT5G38420.1 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) |
           chr5:15381203-15381978 REVERSE
          Length = 181

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 8/174 (4%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +S  ++TS   A   + + GLK++++   FP     + +  ++ SNG R+ CMK W P
Sbjct: 5   MFSSTAVVTSPAQATMVAPFTGLKSSAS---FPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRY 115
           I  KKFETLSYLP LSD  +AK +DY+++  WIPC+EF+ E G V RE+   PGYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 116 WTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           WT+WKLP+FGC DSAQVL E+ ECKK YP A+IR + FDN +Q QC+SFI  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>AT5G38410.2 | Symbols:  | ribulose bisphosphate carboxylase small
           chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) |
           chr5:15377501-15378306 REVERSE
          Length = 174

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 118/173 (68%), Gaps = 13/173 (7%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++TS   A   + + GLK+++A   FP     + +  ++ SNG R+ CMK W P
Sbjct: 5   MLSSAAVVTSPAQATMVAPFTGLKSSAA---FPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFDEVGHVRRENSRMPGYYDGRYW 116
           I  KKFETLSYLP LSD  +AK +DY+++  WIPC+EF+       E+   PGYYDGRYW
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFE------LEHGNTPGYYDGRYW 115

Query: 117 TLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
           T+WKLP+FGC DSAQVL E+ ECKK YP A+IR + FDN +Q QC+SFI  KP
Sbjct: 116 TMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 168


>AT1G67090.2 | Symbols: RBCS1A | RBCS1A (RIBULOSE BISPHOSPHATE
           CARBOXYLASE SMALL CHAIN 1A); copper ion binding /
           ribulose-bisphosphate carboxylase |
           chr1:25048590-25049249 REVERSE
          Length = 136

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 11/117 (9%)

Query: 1   MSASAGILTS---AVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWNP 56
           M +SA ++ S   A   + + GLK+++A   FPA    + +  ++ SNG R++CM+ W P
Sbjct: 5   MLSSATMVASPAQATMVAPFNGLKSSAA---FPATRKANNDITSITSNGGRVNCMQVWPP 61

Query: 57  INNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD----EVGHVRRENSRMPG 109
           I  KKFETLSYLP L+D  +AK +DY+I+  WIPC+EFD     V  V   ++ M G
Sbjct: 62  IGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFDTDLCTVSTVTHPDTMMDG 118