Jatropha Genome Database

JcCB0025751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025751.10 - phase: 0 /partial
         (191 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780)...   326   7e-90

>AT5G63960.1 | Symbols: EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780); DNA
            binding / DNA-directed DNA polymerase/ nucleic acid
            binding / nucleotide binding | chr5:25599597-25606672
            FORWARD
          Length = 1095

 Score =  326 bits (835), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 155/191 (81%), Positives = 164/191 (85%), Gaps = 2/191 (1%)

Query: 1    RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 60
            RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVL+NNIPIDP YYLENQISKPLLRI
Sbjct: 907  RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLENQISKPLLRI 966

Query: 61   FEPILKNASKELLHGXXXXXXXXXXXXXXXXMKFAKKQLSCIGCKALISNSDRTLCSHCK 120
            FEP+LKNASKELLHG                MKFAKKQLSC+GCK  ISN   TLC+ CK
Sbjct: 967  FEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISNG--TLCASCK 1024

Query: 121  GREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA 180
            GREAELYCK VSQV+ELE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR KAQKDMA
Sbjct: 1025 GREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRMKAQKDMA 1084

Query: 181  EAKRQLDRWNF 191
             A++QLDRW+F
Sbjct: 1085 VARQQLDRWSF 1095