Jatropha Genome Database

JcCB0025551.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025551.20 + phase: 2 /partial
         (206 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45550.1 | Symbols:  | mob1/phocein family protein | chr5:184...   387   e-108
AT4G19045.1 | Symbols:  | protein binding | chr4:10438213-104397...   377   e-105
AT5G20440.1 | Symbols:  | protein binding | chr5:6908646-6909996...   259   1e-69
AT5G20430.1 | Symbols:  | mob1/phocein family protein | chr5:690...   169   2e-42

>AT5G45550.1 | Symbols:  | mob1/phocein family protein |
           chr5:18462284-18464840 FORWARD
          Length = 215

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/204 (88%), Positives = 193/204 (94%)

Query: 1   NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQV 60
           NQKTFRPKK+APSGSKGAQL+KHIDATLGSGNLREAVRLPPGED NEWLAVNTVDFFNQV
Sbjct: 9   NQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDANEWLAVNTVDFFNQV 68

Query: 61  NILYGTLTEFCTATSCPTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDD 120
           N+LYGTLTEFCT  +CPTMTAGPKYEYRWADG+ IKKPIEVSAPKYVEYLMDWIE QLDD
Sbjct: 69  NLLYGTLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDD 128

Query: 121 EMIFPQKLGAPFPTNFRDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVL 180
           E +FPQ+LGAPFP NF+DVVKTIFKRLFRVYAHIYH HFQKIVSLKEEAHLNTCFKHF+L
Sbjct: 129 ETLFPQRLGAPFPQNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 188

Query: 181 FTWEFRLIDKGELAPLQDLVESIL 204
           FT EF LIDK ELAPLQ+L+ESI+
Sbjct: 189 FTHEFGLIDKKELAPLQELIESII 212


>AT4G19045.1 | Symbols:  | protein binding | chr4:10438213-10439788
           REVERSE
          Length = 215

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/204 (86%), Positives = 192/204 (94%)

Query: 1   NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQV 60
           NQKTFRPKK+APSG+KGA+L+KHIDATLGSGNLREAV+LPPGED+NEWLAVNTVDFFNQV
Sbjct: 9   NQKTFRPKKSAPSGTKGAELRKHIDATLGSGNLREAVKLPPGEDLNEWLAVNTVDFFNQV 68

Query: 61  NILYGTLTEFCTATSCPTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDD 120
           N+L+GTLTEFCT  +C TMTAGPKYEYRWADG+ IKKPIEVSAPKYVEYLMDWIE QLDD
Sbjct: 69  NLLFGTLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDD 128

Query: 121 EMIFPQKLGAPFPTNFRDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVL 180
           E IFPQKLGA FP NF++VVKTIFKRLFRVYAHIYH HFQKIVSLKEEAHLNTCFKHF+L
Sbjct: 129 ETIFPQKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 188

Query: 181 FTWEFRLIDKGELAPLQDLVESIL 204
           FT EF LIDK ELAPLQ+L+ESI+
Sbjct: 189 FTHEFVLIDKKELAPLQELIESII 212


>AT5G20440.1 | Symbols:  | protein binding | chr5:6908646-6909996
           FORWARD
          Length = 216

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 148/184 (80%), Gaps = 2/184 (1%)

Query: 22  KHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNILYGTLTEFCTATSCPTMTA 81
           + + + + S NLREAVRLP G DINEW A+NTVDFFNQ+++LY TL EFCT T+CP M A
Sbjct: 32  RELISGIRSDNLREAVRLPQGVDINEWFAMNTVDFFNQISLLYATLEEFCTQTTCPVMNA 91

Query: 82  GPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDDEMIFPQKLGAPFPTNFRDVVK 141
           G +YEYRWADG TI KP  VSAPKYVEYL+DW+E ++D+E IFP+  G PFP NF D VK
Sbjct: 92  G-RYEYRWADGTTITKPKTVSAPKYVEYLIDWVETEIDNEAIFPKNPGEPFPPNFEDFVK 150

Query: 142 TIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDK-GELAPLQDLV 200
            I ++LFRVYAHIY+ HF +IV+L E+AHLNTCFKHF+LF  EF+L+DK  E+AP++ LV
Sbjct: 151 RILRKLFRVYAHIYYSHFHEIVALNEQAHLNTCFKHFLLFVSEFQLVDKEKEMAPIKSLV 210

Query: 201 ESIL 204
           E++L
Sbjct: 211 ETML 214


>AT5G20430.1 | Symbols:  | mob1/phocein family protein |
           chr5:6904705-6905391 FORWARD
          Length = 122

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 99/127 (77%), Gaps = 6/127 (4%)

Query: 79  MTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDDEMIFPQKLGAPFPTNFRD 138
           M AG +YEYRWADG T+     VSAP+YVE LM+WIE Q+D+E IFP+K G PFP NF D
Sbjct: 1   MKAG-RYEYRWADGTTM-----VSAPEYVELLMNWIETQIDNEHIFPKKTGEPFPPNFED 54

Query: 139 VVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVLFTWEFRLIDKGELAPLQD 198
            VK I ++LFRVYAHIYH HF KIV+L E+AHLNTCF  ++LF  EF+L+DK E+ P+Q 
Sbjct: 55  FVKRILRKLFRVYAHIYHSHFPKIVTLNEQAHLNTCFHRYLLFVSEFQLVDKEEMVPIQK 114

Query: 199 LVESILQ 205
           LVE+IL+
Sbjct: 115 LVETILK 121