Jatropha Genome Database

JcCB0025091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.20 + phase: 0 
         (95 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41560.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   139   3e-34

>AT5G41560.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: chloroplast; EXPRESSED IN: 24 plant
          structures; EXPRESSED DURING: 15 growth stages;
          CONTAINS InterPro DOMAIN/s: Ubiquitin ligase,
          Det1/DDB1-complexing (InterPro:IPR018276); Has 59 Blast
          hits to 59 proteins in 19 species: Archae - 0; Bacteria
          - 0; Metazoa - 46; Fungi - 0; Plants - 13; Viruses - 0;
          Other Eukaryotes - 0 (source: NCBI BLink). |
          chr5:16621427-16622619 REVERSE
          Length = 101

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 78/95 (82%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNILLR 60
          M S+LGD PSFDP NFSQ RP+DP+NPSKM P TY PTH+RTLPPPDQVI+TE KNIL+R
Sbjct: 1  MASILGDLPSFDPHNFSQHRPSDPSNPSKMVPTTYRPTHNRTLPPPDQVITTEVKNILIR 60

Query: 61 NFYERAEERLRPKRAASESLIPEHGCKQPRASTSC 95
          +FY+RAEE+LRPKR A++ L  EH  K  RA++S 
Sbjct: 61 SFYQRAEEKLRPKRPATDHLAAEHVNKHFRAASSS 95