Jatropha Genome Database
- JcCB0024801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0024801.10 - phase: 0
(513 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | SHM1 (SERINE TRANSHYDR... 933 0.0
AT5G26780.1 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFER... 897 0.0
AT5G26780.2 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFER... 885 0.0
AT5G26780.3 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFER... 885 0.0
AT4G32520.2 | Symbols: SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFER... 588 e-168
AT4G32520.1 | Symbols: SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFER... 588 e-168
AT4G13930.1 | Symbols: SHM4 | SHM4 (serine hydroxymethyltransfer... 546 e-155
AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | EDA36 (EMBRYO SAC DE... 517 e-147
AT1G36370.1 | Symbols: SHM7 | SHM7 (serine hydroxymethyltransfer... 474 e-134
AT1G22020.1 | Symbols: SHM6 | SHM6 (serine hydroxymethyltransfer... 467 e-132
>AT4G37930.1 | Symbols: SHM1, STM, SHMT1 | SHM1 (SERINE
TRANSHYDROXYMETHYLTRANSFERASE 1); glycine
hydroxymethyltransferase/ poly(U) binding |
chr4:17831891-17834742 REVERSE
Length = 517
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/516 (87%), Positives = 478/516 (92%), Gaps = 4/516 (0%)
Query: 1 MAMALRRLSSSFDKPIRPLFNATSVYYKSSLPNEAVYEKEKSGVTWPKQLNAPLEAVDPE 60
MAMALRRLSSS DKPIRPL +TS Y SSLP+EAV EKE+S VTWPKQLNAPLE VDPE
Sbjct: 3 MAMALRRLSSSIDKPIRPLIRSTSCYM-SSLPSEAVDEKERSRVTWPKQLNAPLEEVDPE 61
Query: 61 IADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 120
IADIIE EKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA
Sbjct: 62 IADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 121
Query: 121 ETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHG 180
ETLCQKRALEAFRLDP KWGVNVQ LSGSPANF VYTALLKPH+RIMALDLPHGGHLSHG
Sbjct: 122 ETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHG 181
Query: 181 YQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYS 240
YQTDTKKISAVSIFFETMPYRL+ESTGYIDYDQ+EKSATLFRPKLIVAGASAYARLYDY+
Sbjct: 182 YQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYA 241
Query: 241 RIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRKG 300
RIRKVC+KQKA++LADMAHISGLVAA VIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKG
Sbjct: 242 RIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKG 301
Query: 301 VKEINKQGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLS 360
VKEINKQG++VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQVLS
Sbjct: 302 VKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLS 361
Query: 361 NCSKFAETLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV 420
N +KFA+TL+E+GY+LVSGGT+NHLVLVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDV
Sbjct: 362 NSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDV 421
Query: 421 SAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXGTKLKDFLAALPN 480
SAMVPGGIRMGTPALTSRGFVEEDFAKVAE+FD GTKLKDF++A+ +
Sbjct: 422 SAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMES 481
Query: 481 ---FQPEIAKLRHDVEGYAKQFPTIGFEKETMKYKN 513
Q EIAKLRH+VE +AKQFPTIGFEKETMKYKN
Sbjct: 482 SSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517
>AT5G26780.1 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE
2); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr5:9418299-9421725
FORWARD
Length = 517
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/516 (83%), Positives = 466/516 (90%), Gaps = 4/516 (0%)
Query: 1 MAMALRRLSSSFDKPIRPLF-NATSVYYKSSLPNEAVYEKEKSGVTWPKQLNAPLEAVDP 59
MA+ALRRLSSS KPI L N S+ + SSL A+ E EKS +W KQLNA L+ +DP
Sbjct: 1 MALALRRLSSSVKKPISLLSSNGGSLRFMSSLSTAAMAESEKSRSSWIKQLNASLDEIDP 60
Query: 60 EIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 119
E+ADIIELEKARQWKG ELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM
Sbjct: 61 EVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 120
Query: 120 AETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSH 179
AETLCQKRALEAF+LDP+KWGVNVQSLSGSPANFQVYTALLKPH+RIMALDLPHGGHLSH
Sbjct: 121 AETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSH 180
Query: 180 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 239
GYQTDTKKISAVSIFFETMPYRL+E+TGYIDYDQLEKSA LFRPKLIVAGASAYARLYDY
Sbjct: 181 GYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDY 240
Query: 240 SRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRK 299
+RIRKVC+KQKA++LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF+RK
Sbjct: 241 ARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 300
Query: 300 GVKEINKQGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVL 359
G+KEINKQG++V+YD+ED+INQAVFPGLQGGPHNHTITGLAVALKQA TPEYKAYQ+QVL
Sbjct: 301 GLKEINKQGKEVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVL 360
Query: 360 SNCSKFAETLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD 419
NCSKFAETL+ KGYDLVSGGT+NHLVLVNLKNKGIDGSRVEKVLE VHIAANKNTVPGD
Sbjct: 361 RNCSKFAETLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGD 420
Query: 420 VSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXGTKLKDFLAALP 479
VSAMVPGGIRMGTPALTSRGF+EEDFAKVAE+FD GTKLKDF+A +
Sbjct: 421 VSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIKAESQGTKLKDFVATMQ 480
Query: 480 N---FQPEIAKLRHDVEGYAKQFPTIGFEKETMKYK 512
+ Q E++KLR VE YAKQFPTIGFEKETM+YK
Sbjct: 481 SNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYK 516
>AT5G26780.2 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE
2); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr5:9418299-9421725
FORWARD
Length = 533
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/532 (80%), Positives = 466/532 (87%), Gaps = 20/532 (3%)
Query: 1 MAMALRRLSSSFDKPIRPLF-NATSVYYKSSLPNEAVYEKEKSGVTWPKQLNAPLEAVDP 59
MA+ALRRLSSS KPI L N S+ + SSL A+ E EKS +W KQLNA L+ +DP
Sbjct: 1 MALALRRLSSSVKKPISLLSSNGGSLRFMSSLSTAAMAESEKSRSSWIKQLNASLDEIDP 60
Query: 60 EIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 119
E+ADIIELEKARQWKG ELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM
Sbjct: 61 EVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 120
Query: 120 AETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSH 179
AETLCQKRALEAF+LDP+KWGVNVQSLSGSPANFQVYTALLKPH+RIMALDLPHGGHLSH
Sbjct: 121 AETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSH 180
Query: 180 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 239
GYQTDTKKISAVSIFFETMPYRL+E+TGYIDYDQLEKSA LFRPKLIVAGASAYARLYDY
Sbjct: 181 GYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDY 240
Query: 240 SRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRK 299
+RIRKVC+KQKA++LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF+RK
Sbjct: 241 ARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 300
Query: 300 GVKEINKQGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVL 359
G+KEINKQG++V+YD+ED+INQAVFPGLQGGPHNHTITGLAVALKQA TPEYKAYQ+QVL
Sbjct: 301 GLKEINKQGKEVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVL 360
Query: 360 SNCSKFAE----------------TLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKV 403
NCSKFAE TL+ KGYDLVSGGT+NHLVLVNLKNKGIDGSRVEKV
Sbjct: 361 RNCSKFAELDIRPTVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKV 420
Query: 404 LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXX 463
LE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDFAKVAE+FD
Sbjct: 421 LELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIK 480
Query: 464 XXXXGTKLKDFLAALPN---FQPEIAKLRHDVEGYAKQFPTIGFEKETMKYK 512
GTKLKDF+A + + Q E++KLR VE YAKQFPTIGFEKETM+YK
Sbjct: 481 AESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYK 532
>AT5G26780.3 | Symbols: SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE
2); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr5:9418299-9421725
FORWARD
Length = 533
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/532 (80%), Positives = 466/532 (87%), Gaps = 20/532 (3%)
Query: 1 MAMALRRLSSSFDKPIRPLF-NATSVYYKSSLPNEAVYEKEKSGVTWPKQLNAPLEAVDP 59
MA+ALRRLSSS KPI L N S+ + SSL A+ E EKS +W KQLNA L+ +DP
Sbjct: 1 MALALRRLSSSVKKPISLLSSNGGSLRFMSSLSTAAMAESEKSRSSWIKQLNASLDEIDP 60
Query: 60 EIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 119
E+ADIIELEKARQWKG ELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM
Sbjct: 61 EVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 120
Query: 120 AETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSH 179
AETLCQKRALEAF+LDP+KWGVNVQSLSGSPANFQVYTALLKPH+RIMALDLPHGGHLSH
Sbjct: 121 AETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSH 180
Query: 180 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 239
GYQTDTKKISAVSIFFETMPYRL+E+TGYIDYDQLEKSA LFRPKLIVAGASAYARLYDY
Sbjct: 181 GYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDY 240
Query: 240 SRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRK 299
+RIRKVC+KQKA++LADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF+RK
Sbjct: 241 ARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 300
Query: 300 GVKEINKQGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVL 359
G+KEINKQG++V+YD+ED+INQAVFPGLQGGPHNHTITGLAVALKQA TPEYKAYQ+QVL
Sbjct: 301 GLKEINKQGKEVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVL 360
Query: 360 SNCSKFAE----------------TLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKV 403
NCSKFAE TL+ KGYDLVSGGT+NHLVLVNLKNKGIDGSRVEKV
Sbjct: 361 RNCSKFAELDIRPTVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKV 420
Query: 404 LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXX 463
LE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDFAKVAE+FD
Sbjct: 421 LELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEEDFAKVAEYFDLAVKIALKIK 480
Query: 464 XXXXGTKLKDFLAALPN---FQPEIAKLRHDVEGYAKQFPTIGFEKETMKYK 512
GTKLKDF+A + + Q E++KLR VE YAKQFPTIGFEKETM+YK
Sbjct: 481 AESQGTKLKDFVATMQSNEKLQSEMSKLREMVEEYAKQFPTIGFEKETMRYK 532
>AT4G32520.2 | Symbols: SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE
3); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr4:15689642-15692334
REVERSE
Length = 529
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/497 (58%), Positives = 349/497 (70%), Gaps = 21/497 (4%)
Query: 20 FNATSVYYKSSLPNEAVYEKEKSGVTWPK----QLNAPLE-----AVDPEIADIIELEKA 70
FN + + S L V E S V+ P P E VDPE+ II EK
Sbjct: 40 FNISKPFRSSFLKRNLVSEMRASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKD 99
Query: 71 RQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALE 130
RQ++ LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID ETLCQ RAL
Sbjct: 100 RQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALA 159
Query: 131 AFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 190
AFRLD KWGVNVQ LSGSPANF VYTA+L PHDRIM LDLPHGGHLSHG+ T +++S
Sbjct: 160 AFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSG 219
Query: 191 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYSRIRKVCDKQK 250
SI+FE+MPYRL+ESTG +DYD LEK+ATLFRPKLI+AGASAY+R +DY R+RK+ D
Sbjct: 220 TSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVG 279
Query: 251 AILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRKGVKEINKQGQQ 310
A L+ DMAHISGLVAA V+ PFEY D+VTTTTHKSLRGPRG MIF+RK IN
Sbjct: 280 AFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRK--DPING---- 333
Query: 311 VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAETLV 370
D E +N AVFPGLQGGPHNHTI GLAV LK A +PE+KAYQ++V+SNC A LV
Sbjct: 334 --VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRALANRLV 391
Query: 371 EKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRM 430
E G+ LVSGG++NHLVLV+L+ G+DG+RVEK+L+ I NKN+VPGD SA+VPGGIR+
Sbjct: 392 ELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVPGGIRI 451
Query: 431 GTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXGTKLKDF--LAALPNF--QPEIA 486
G+PA+T+RG E+DF VA+F G+KL+DF P F + +
Sbjct: 452 GSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPLKERVK 511
Query: 487 KLRHDVEGYAKQFPTIG 503
L+ VE + +FP G
Sbjct: 512 SLKERVETFTSRFPIPG 528
>AT4G32520.1 | Symbols: SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE
3); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr4:15689642-15692334
REVERSE
Length = 529
Score = 588 bits (1515), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/497 (58%), Positives = 349/497 (70%), Gaps = 21/497 (4%)
Query: 20 FNATSVYYKSSLPNEAVYEKEKSGVTWPK----QLNAPLE-----AVDPEIADIIELEKA 70
FN + + S L V E S V+ P P E VDPE+ II EK
Sbjct: 40 FNISKPFRSSFLKRNLVSEMRASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKD 99
Query: 71 RQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALE 130
RQ++ LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNEYID ETLCQ RAL
Sbjct: 100 RQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALA 159
Query: 131 AFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 190
AFRLD KWGVNVQ LSGSPANF VYTA+L PHDRIM LDLPHGGHLSHG+ T +++S
Sbjct: 160 AFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSG 219
Query: 191 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYSRIRKVCDKQK 250
SI+FE+MPYRL+ESTG +DYD LEK+ATLFRPKLI+AGASAY+R +DY R+RK+ D
Sbjct: 220 TSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVG 279
Query: 251 AILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRKGVKEINKQGQQ 310
A L+ DMAHISGLVAA V+ PFEY D+VTTTTHKSLRGPRG MIF+RK IN
Sbjct: 280 AFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFRK--DPING---- 333
Query: 311 VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAETLV 370
D E +N AVFPGLQGGPHNHTI GLAV LK A +PE+KAYQ++V+SNC A LV
Sbjct: 334 --VDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSNCRALANRLV 391
Query: 371 EKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRM 430
E G+ LVSGG++NHLVLV+L+ G+DG+RVEK+L+ I NKN+VPGD SA+VPGGIR+
Sbjct: 392 ELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGDKSALVPGGIRI 451
Query: 431 GTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXGTKLKDF--LAALPNF--QPEIA 486
G+PA+T+RG E+DF VA+F G+KL+DF P F + +
Sbjct: 452 GSPAMTTRGLSEKDFVVVADFIKEGVEITMEAKKAAPGSKLQDFNKFVTSPEFPLKERVK 511
Query: 487 KLRHDVEGYAKQFPTIG 503
L+ VE + +FP G
Sbjct: 512 SLKERVETFTSRFPIPG 528
>AT4G13930.1 | Symbols: SHM4 | SHM4 (serine hydroxymethyltransferase
4); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr4:8048013-8050021
REVERSE
Length = 471
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 273/465 (58%), Positives = 331/465 (71%), Gaps = 4/465 (0%)
Query: 51 NAPLEAVDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 110
N L +VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RY
Sbjct: 9 NTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIPGNRY 68
Query: 111 YGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALD 170
YGGNE+ID E LC+ RALEAF DPA WGVNVQ SGSPANF YTALL+PHDRIM LD
Sbjct: 69 YGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRIMGLD 128
Query: 171 LPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 229
LP GGHL+HGY T KKISA SI+FE++PY++N +TGYIDYD+LE+ A FRPKL++ G
Sbjct: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKLLICG 188
Query: 230 ASAYARLYDYSRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 289
SAY R +DY+R R + DK A+LL DMAHISGLVAA +PFEY DVVTTTTHKSLRG
Sbjct: 189 GSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRG 248
Query: 290 PRGAMIFYRKGVKEINK-QGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 348
PR MIFYRKG K K Q + +YDFEDKIN AVFP LQGGPHNH I LAVALKQA T
Sbjct: 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANT 308
Query: 349 PEYKAYQEQVLSNCSKFAETLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVH 408
P +K Y +QV +N L+ KGY +V+ GTENHLVL +L+ G+ G++VEK+ +
Sbjct: 309 PGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKVEKLCDLCS 368
Query: 409 IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXG 468
I NKN V GD SA+ PGG+R+G PA+TSRG VE+DF ++ EF G
Sbjct: 369 ITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLS-RAVTLTLDIQKTYG 427
Query: 469 TKLKDFLAALPNFQPEIAKLRHDVEGYAKQFPTIGFEKETMKYKN 513
LKDF L N ++ +L+ DVE ++ + GF MKYK+
Sbjct: 428 KLLKDFNKGLVN-NKDLDQLKADVEKFSASYEMPGFLMSEMKYKD 471
>AT4G13890.1 | Symbols: SHM5, EDA36, EDA37 | EDA36 (EMBRYO SAC
DEVELOPMENT ARREST 37); catalytic/ glycine
hydroxymethyltransferase/ pyridoxal phosphate binding |
chr4:8032146-8033718 REVERSE
Length = 470
Score = 517 bits (1331), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/456 (56%), Positives = 318/456 (69%), Gaps = 4/456 (0%)
Query: 51 NAPLEAVDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 110
N L+ VDPEI D+IE EK RQ +G+ELI +ENFTSV+VM+A+GS +TNKYSEG PG RY
Sbjct: 9 NTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRY 68
Query: 111 YGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALD 170
YGG E+ID E+LC+ R+LEAF +P KWGVNVQ SGSPANF YTALL+PHDRIM LD
Sbjct: 69 YGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLD 128
Query: 171 LPHGGHLSHG-YQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 229
LP GGH++HG Y + K ISA SI+FE +PY+++ TGYIDYD+LE+ A FRPKLI+ G
Sbjct: 129 LPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICG 188
Query: 230 ASAYARLYDYSRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 289
++Y R +DY+R R V DK A LL DMAH S LVAA PFEY DVVTT+THKSLRG
Sbjct: 189 GTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRG 248
Query: 290 PRGAMIFYRKGVKEINK-QGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 348
PR MIFYRKG K K Q + +YDF+ KIN AVFP LQ GPHN+ I LAVALKQ
Sbjct: 249 PRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMA 308
Query: 349 PEYKAYQEQVLSNCSKFAETLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVH 408
P +K Y +QV +N + A L+ KGY LV+ GT+NHL+L +L+ G+ G++VEKV E +
Sbjct: 309 PSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCY 368
Query: 409 IAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXG 468
I N+N V GD S + PGG+R+GTPA+TSRG VE+DF K+ EF G
Sbjct: 369 ITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFL-HRAVTITLDIQEQYG 427
Query: 469 TKLKDFLAALPNFQPEIAKLRHDVEGYAKQFPTIGF 504
+KDF L N EI +++ DVE + F GF
Sbjct: 428 KVMKDFNKGLVN-NKEIDEIKADVEEFTYDFDMPGF 462
>AT1G36370.1 | Symbols: SHM7 | SHM7 (serine hydroxymethyltransferase
7); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr1:13696240-13698576
REVERSE
Length = 598
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/491 (50%), Positives = 322/491 (65%), Gaps = 15/491 (3%)
Query: 18 PLFNATSVYYKSSLPNEAVYEKEKSGV-TWPKQLNAPLEAVDPEIADIIELEKARQWKGL 76
PL S + K S ++ E ++ V W Q P+ DP+I +++E EK RQ +G+
Sbjct: 104 PLLLTQSKHPKRSSIGDSDLESRRAAVRAWGDQ---PIHLADPDIHELMEKEKQRQVRGI 160
Query: 77 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDP 136
ELI SENF +VM+A+GS +TNKYSEG PGARYY GN+YID E LC +RAL AF L+
Sbjct: 161 ELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIENLCIERALTAFGLES 220
Query: 137 AKWGVNVQSLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQT-DTKKISAVSIFF 195
KWGVNVQ S + ANF VYT LL P +RIM LD P GGH+SHGY T KKISA SIFF
Sbjct: 221 DKWGVNVQPYSCTSANFAVYTGLLLPGERIMGLDSPSGGHMSHGYCTPGGKKISAASIFF 280
Query: 196 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYSRIRKVCDKQKAILLA 255
E+ PY++N TGYIDYD+LE A +RPK+++ G S+Y R +D++R+R++ DK A+L+
Sbjct: 281 ESFPYKVNPQTGYIDYDKLEDKALDYRPKILICGGSSYPRDWDFARVRQIADKCGAVLMC 340
Query: 256 DMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFYRKGVKEINKQGQQ----- 310
DMAHISGLVA +PF++ D+VT+TTHK LRGPRG +IFYR+G K I KQG
Sbjct: 341 DMAHISGLVATKECSNPFDHCDIVTSTTHKGLRGPRGGIIFYRRGPK-IRKQGHHSSHCD 399
Query: 311 --VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAET 368
YD E+KIN AVFP LQGGPHN+ I LA+ALKQ TPEYKAY +Q+ N A
Sbjct: 400 TSTHYDLEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYIQQMKKNAQALAAA 459
Query: 369 LVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGI 428
L+ + LV+GGT+NHL+L +L G+ G EKV E HI NK + GD + PGG+
Sbjct: 460 LLRRKCRLVTGGTDNHLLLWDLTPMGLTGKVYEKVCEMCHITLNKTAIFGDNGTISPGGV 519
Query: 429 RMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXXXXXXGTKLKDFLAALPNFQPEIAKL 488
R+GTPA+T+RG +E DF +A+F G K+F+ +L + +IA+L
Sbjct: 520 RIGTPAMTTRGCIESDFETMADFL-IKAAQITSALQREHGKSHKEFVKSLCTNK-DIAEL 577
Query: 489 RHDVEGYAKQF 499
R+ VE +A Q+
Sbjct: 578 RNRVEAFALQY 588
>AT1G22020.1 | Symbols: SHM6 | SHM6 (serine hydroxymethyltransferase
6); catalytic/ glycine hydroxymethyltransferase/
pyridoxal phosphate binding | chr1:7754599-7757087
FORWARD
Length = 599
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/462 (50%), Positives = 309/462 (66%), Gaps = 9/462 (1%)
Query: 51 NAPLEAVDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 110
N +E DPEI + +E EK RQ++G+ELI SENF +VM+A+GS +TNKYSEG PGARY
Sbjct: 139 NQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 198
Query: 111 YGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPANFQVYTALLKPHDRIMALD 170
Y GN+YID E LCQ+RAL AF L+ KWGVNVQ S + ANF V+T LL P +RIM LD
Sbjct: 199 YTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGERIMGLD 258
Query: 171 LPHGGHLSHGYQT-DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 229
P GGH+SHGY T KK+S SIFFE+ PY+++ TGYIDYD+LE+ A +RPK+++ G
Sbjct: 259 SPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPKILICG 318
Query: 230 ASAYARLYDYSRIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 289
S+Y R +++ R R + DK A+L+ DMA ISGLVAA P+PF+Y D+VT+TTHKSLRG
Sbjct: 319 GSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAKESPNPFDYCDIVTSTTHKSLRG 378
Query: 290 PRGAMIFYRKGVK------EINKQGQQVLYDFEDKINQAVFPGLQGGPHNHTITGLAVAL 343
PRG +IFY++G+K +N + YDFE+KIN +VFP LQGGPHN+ I LA+AL
Sbjct: 379 PRGGIIFYKRGLKPKKQSINLNHCESNIQYDFEEKINFSVFPSLQGGPHNNHIAALAIAL 438
Query: 344 KQATTPEYKAYQEQVLSNCSKFAETLVEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKV 403
KQA +PEYK Y QV N A L+ + L++GGT+NHL+L +L G+ G EKV
Sbjct: 439 KQAASPEYKLYMRQVKKNAKALASALISRKCKLITGGTDNHLLLWDLTPLGLTGKVYEKV 498
Query: 404 LEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEFFDXXXXXXXXXX 463
E HI NK + + + PGG+R+G+PA+TSRG +E +F +A+F
Sbjct: 499 CEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFL-YRAAQIASAA 557
Query: 464 XXXXGTKLKDFLAALPNFQPEIAKLRHDVEGYAKQFPTIGFE 505
G K+ L ++ + + EIA LR+ VE +A QF F+
Sbjct: 558 QREHGKLQKEPLKSIYHCK-EIADLRNQVEAFATQFAMPAFD 598