Jatropha Genome Database
- JcCB0023791.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0023791.10 + phase: 0 /partial
(112 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38895.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 101 8e-23
AT5G15790.2 | Symbols: | zinc finger (C3HC4-type RING finger) f... 97 2e-21
AT5G15790.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 97 2e-21
AT3G02290.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 96 4e-21
AT5G41350.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 77 3e-15
AT4G00335.2 | Symbols: RHB1A | RHB1A; protein binding / zinc ion... 73 3e-14
AT4G00335.1 | Symbols: RHB1A | RHB1A; protein binding / zinc ion... 73 3e-14
AT4G00335.3 | Symbols: RHB1A | RHB1A; protein binding / zinc ion... 73 3e-14
AT4G23450.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 71 2e-13
AT4G14220.1 | Symbols: RHF1A | RHF1A (RING-H2 GROUP F1A); protei... 65 1e-11
AT5G22000.2 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protei... 58 1e-09
AT5G22000.3 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protei... 58 1e-09
AT5G22000.1 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protei... 58 1e-09
AT5G37250.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 53 3e-08
AT5G37270.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 53 3e-08
AT5G37230.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 51 2e-07
AT2G17730.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 4e-07
AT4G35840.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 4e-07
AT4G28890.1 | Symbols: | protein binding / ubiquitin-protein li... 49 5e-07
AT5G66070.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 7e-07
AT5G66070.2 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 7e-07
AT4G05350.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 7e-07
AT5G37200.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 49 9e-07
AT1G51930.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 48 1e-06
AT3G58720.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 48 1e-06
AT2G20030.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 48 2e-06
AT1G72220.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 47 2e-06
AT5G66160.2 | Symbols: RMR1 | JR700; peptidase/ protein binding ... 47 2e-06
AT5G66160.1 | Symbols: ATRMR1, RMR1 | JR700; peptidase/ protein ... 47 2e-06
AT5G17600.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 47 3e-06
AT1G74620.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 46 5e-06
AT1G68070.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 46 6e-06
AT2G01735.1 | Symbols: RIE1 | RIE1 (RING-FINGER PROTEIN FOR EMBR... 45 8e-06
AT4G12190.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 45 8e-06
AT3G20395.1 | Symbols: | protein binding / zinc ion binding | c... 45 9e-06
>AT5G38895.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:15572084-15573315 FORWARD
Length = 221
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%)
Query: 18 SKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWM 77
+K +SK I YA DDED+CPTCL+DY+ +NP+I+T C HHFHL CIYEWM
Sbjct: 141 TKGSSTFTKSKTMPGIEVYYADSDDEDICPTCLDDYTLENPKIITKCSHHFHLSCIYEWM 200
Query: 78 ERSQSCPLCFKVINF 92
ERS++CP+C KV+ F
Sbjct: 201 ERSETCPVCGKVMAF 215
>AT5G15790.2 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:5149800-5150964 FORWARD
Length = 232
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 36 LYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
LY + DDEDVCPTCLE+Y +NP+IVT C HHFHL CIYEWMERS++CP+C KV+ F
Sbjct: 172 LYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 228
>AT5G15790.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:5149800-5150964 FORWARD
Length = 232
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 36 LYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
LY + DDEDVCPTCLE+Y +NP+IVT C HHFHL CIYEWMERS++CP+C KV+ F
Sbjct: 172 LYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEF 228
>AT3G02290.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:459385-460688 FORWARD
Length = 231
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%)
Query: 25 RESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCP 84
R + A+ +Y +DEDVCPTCLE+Y+ +NP+IVT C HHFHL CIYEWMERS++CP
Sbjct: 160 RSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCP 219
Query: 85 LCFKVINF 92
+C KV+ F
Sbjct: 220 VCGKVMEF 227
>AT5G41350.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:16542026-16543092 REVERSE
Length = 212
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 41 DDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
++E+ CP CLE+Y +NP++V C HHFHL CI EWMERS++CP+C K + F
Sbjct: 156 EEEEDCPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNKEMVF 207
>AT4G00335.2 | Symbols: RHB1A | RHB1A; protein binding / zinc ion
binding | chr4:146866-147962 FORWARD
Length = 190
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 41 DDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
++ED CP C EDY +NPR+ T C+H FHL C+ EW+ERS CP+C K + F
Sbjct: 134 EEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVF 185
>AT4G00335.1 | Symbols: RHB1A | RHB1A; protein binding / zinc ion
binding | chr4:146866-147962 FORWARD
Length = 190
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 41 DDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
++ED CP C EDY +NPR+ T C+H FHL C+ EW+ERS CP+C K + F
Sbjct: 134 EEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVF 185
>AT4G00335.3 | Symbols: RHB1A | RHB1A; protein binding / zinc ion
binding | chr4:146866-147957 FORWARD
Length = 189
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 41 DDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKV 89
++ED CP C EDY +NPR+ T C+H FHL C+ EW+ERS CP+C KV
Sbjct: 134 EEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKV 182
>AT4G23450.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr4:12241113-12241837 REVERSE
Length = 153
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 44 DVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFK 88
D CP CLE+Y DNP+++T C H FHL CI WMERS++CP+C K
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDK 146
>AT4G14220.1 | Symbols: RHF1A | RHF1A (RING-H2 GROUP F1A); protein
binding / ubiquitin-protein ligase/ zinc ion binding |
chr4:8196012-8198240 FORWARD
Length = 371
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 11 SSDYNNSSKSP-HPIRESKLEAEITYLYASQDD---EDVCPTCLEDYSFDNPRIVTHCQH 66
+S +N S SP +P S + + AS DD +D C CLE ++ +P VT C+H
Sbjct: 7 TSAFNLSDNSPFNPAIGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKH 66
Query: 67 HFHLGCIYEWMERSQSCPLCFKV 89
+HL CI EW +RS+ CP+C+++
Sbjct: 67 EYHLQCIIEWSQRSKECPICWQL 89
>AT5G22000.2 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protein
binding / zinc ion binding | chr5:7277436-7279553
FORWARD
Length = 375
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
+D C CLE + +P +T C+H +HL CI EW +RS CP+C++ I+
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISL 79
>AT5G22000.3 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protein
binding / zinc ion binding | chr5:7277436-7279553
FORWARD
Length = 375
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
+D C CLE + +P +T C+H +HL CI EW +RS CP+C++ I+
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISL 79
>AT5G22000.1 | Symbols: RHF2A | RHF2A (RING-H2 GROUP F2A); protein
binding / zinc ion binding | chr5:7277436-7279553
FORWARD
Length = 375
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 43 EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
+D C CLE + +P +T C+H +HL CI EW +RS CP+C++ I+
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISL 79
>AT5G37250.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:14750393-14750971 FORWARD
Length = 192
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 7 DIVRSSDYNNSSKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSF---DNPRIVTH 63
D++ SS S+ + + E + E+T L ++E C CLED+S DN ++
Sbjct: 101 DVMFSSIAVRSTDTFQRLLEEQ-TMELTDL--GDEEETTCSICLEDFSESHDDNIILLPD 157
Query: 64 CQHHFHLGCIYEWMERSQSCPLCFKV 89
C H FH CI+EW++R +SCPLC +V
Sbjct: 158 CFHLFHQNCIFEWLKRQRSCPLCRRV 183
>AT5G37270.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:14757933-14758559 REVERSE
Length = 208
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 30 EAEITYLYASQDDEDVCPTCLEDYSF---DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
E + + ++E C CLED+S DN ++ C H FH CI+EW++R +SCPLC
Sbjct: 137 EQTMEFTDLGDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRSCPLC 196
Query: 87 FKV 89
+V
Sbjct: 197 RRV 199
>AT5G37230.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:14735154-14735780 FORWARD
Length = 208
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 41 DDEDVCPTCLEDYSF---DNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKV 89
++E C C+ED+S DN ++ C H FH CI++W++R +SCPLC +V
Sbjct: 148 EEETTCSICMEDFSESHDDNIILLPDCFHLFHQSCIFKWLKRQRSCPLCRRV 199
>AT2G17730.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr2:7704142-7705312 FORWARD
Length = 241
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 SQDDEDVCPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
+ ++ D C CL+D+ + R + HC H FHL CI W+ R SCP+C
Sbjct: 189 ASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMC 237
>AT4G35840.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr4:16981083-16982266 FORWARD
Length = 236
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 SQDDEDVCPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
+ ++D C CL+D+ + R + HC H FHL CI W+ R SCP+C
Sbjct: 184 ASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMC 232
>AT4G28890.1 | Symbols: | protein binding / ubiquitin-protein
ligase/ zinc ion binding | chr4:14256437-14257735
REVERSE
Length = 432
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 46 CPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
C CL + S + R++ C+H FH+GCI +W+E+ +CPLC
Sbjct: 123 CSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>AT5G66070.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:26421923-26423033 FORWARD
Length = 221
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 46 CPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
C CL+D+ + R + HC H FHL CI +W+ R SCPLC
Sbjct: 176 CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLC 217
>AT5G66070.2 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:26421923-26423033 FORWARD
Length = 245
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 46 CPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
C CL+D+ + R + HC H FHL CI +W+ R SCPLC
Sbjct: 200 CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLC 241
>AT4G05350.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr4:2726910-2727530 REVERSE
Length = 206
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 4 NGFDIVRS--------SDYNNSSKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDY-S 54
NGF + + S +N KS + +++AE + + + + C CLE S
Sbjct: 109 NGFTLTMAATVTYRTVSVMSNDEKSLRMVLLGRMKAE--EFKSLKMETEPCSICLESLVS 166
Query: 55 FDNPRIVTH--CQHHFHLGCIYEWMERSQSCPLC 86
PR VT C H FH GC+ EW++R +CPLC
Sbjct: 167 GPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLC 200
>AT5G37200.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:14727832-14728485 FORWARD
Length = 217
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 40 QDDEDVCPTCLEDYSFDNPRI--VTHCQHHFHLGCIYEWMERSQSCPLCFKV 89
+++++ C C+E +S + I V C H FH GC++EW+ SCPLC KV
Sbjct: 153 EEEDETCSICIEKFSESHEDIIRVPDCLHLFHQGCLFEWLGLQNSCPLCRKV 204
>AT1G51930.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:19294838-19295236 REVERSE
Length = 132
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 CPTCLEDYSFDNP-RIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINFFNLYL 97
CP CLE+Y D+ R + +C H FHL CI W+ + Q+CP C + ++ +L L
Sbjct: 80 CPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQNCPSCRRSVDLMSLGL 132
>AT3G58720.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:21716920-21717892 REVERSE
Length = 238
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 34 TYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVI 90
T + ++D+ C CLED+ ++T C+H FH CI W++ CP+C VI
Sbjct: 132 TQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPWLKTKGQCPVCRFVI 188
>AT2G20030.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr2:8647813-8648985 FORWARD
Length = 390
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 46 CPTCLEDYS-FDNPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
C CL + + R++ C+H FH+GCI +W+E+ +CPLC +N
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNI 171
>AT1G72220.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:27184388-27185629 REVERSE
Length = 413
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 46 CPTCLEDYSFDNP-RIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINFFNLYLP 98
CP CL ++ D R++ C H FH+ CI W+ +CPLC I ++ P
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTP 230
>AT5G66160.2 | Symbols: RMR1 | JR700; peptidase/ protein binding /
zinc ion binding | chr5:26445198-26446722 FORWARD
Length = 290
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 25 RESKLEAEITYLY--------ASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEW 76
R +L+A++ + A + C CLEDY F + CQH FHL CI W
Sbjct: 203 RTIRLDAKLVHTLPCFTFTDSAHHKAGETCAICLEDYRFGESLRLLPCQHAFHLNCIDSW 262
Query: 77 MER-SQSCPLC 86
+ + SCP+C
Sbjct: 263 LTKWGTSCPVC 273
>AT5G66160.1 | Symbols: ATRMR1, RMR1 | JR700; peptidase/ protein
binding / zinc ion binding | chr5:26445198-26446878
FORWARD
Length = 310
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 44 DVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMER-SQSCPLC 86
+ C CLEDY F + CQH FHL CI W+ + SCP+C
Sbjct: 230 ETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVC 273
>AT5G17600.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:5800029-5801117 REVERSE
Length = 362
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 18 SKSPHPIRESKLEAEITYLYASQD---DEDVCPTCLEDYSFDNP-RIVTHCQHHFHLGCI 73
S + + ES +++ Y Y S D D C CL ++ + R++ C H FHL CI
Sbjct: 111 STNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCI 170
Query: 74 YEWMERSQSCPLCFKVINFFN 94
W++ +CPLC + N
Sbjct: 171 DTWLKSHSNCPLCRAFVTGVN 191
>AT1G74620.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:28028252-28029001 FORWARD
Length = 249
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 35 YLYASQDDEDVCPTCLEDYSFDNPRIVTH--CQHHFHLGCIYEWMERSQSCPLC 86
YL + +E+ C C+EDY + IV C H FH CI +W++ + CPLC
Sbjct: 172 YLNVATTEENGCAICMEDY-IEGSSIVAKLPCDHEFHGDCINKWLQLNHMCPLC 224
>AT1G68070.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:25515412-25516767 REVERSE
Length = 343
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 41 DDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
+D D C CL Y + C HHFH CI +W++ + +CPLC
Sbjct: 288 EDADCC-ICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLC 332
>AT2G01735.1 | Symbols: RIE1 | RIE1 (RING-FINGER PROTEIN FOR
EMBRYOGENESIS); protein binding / zinc ion binding |
chr2:324499-325895 FORWARD
Length = 359
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 21 PHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERS 80
P PI L E T L +D D C CL Y C HHFH CI +W++
Sbjct: 286 PIPINGLCLATERTLL---AEDADCC-ICLSSYEDGAELHALPCNHHFHSTCIVKWLKMR 341
Query: 81 QSCPLC 86
+CPLC
Sbjct: 342 ATCPLC 347
>AT4G12190.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr4:7278545-7278760 REVERSE
Length = 71
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 36 LYASQDDEDVCPTCLEDY-SFDNPRIVTH--CQHHFHLGCIYEWMERSQSCPLC 86
L + + + + C CLE S PR +T C H FH GC+ EW++R +CPLC
Sbjct: 12 LKSLKMETEPCSICLESLVSGPKPRDITRMTCSHVFHNGCLLEWLKRKNTCPLC 65
>AT3G20395.1 | Symbols: | protein binding / zinc ion binding |
chr3:7112020-7113792 REVERSE
Length = 223
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 46 CPTCLEDYS-FDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
C CL+D+ + R + C H FH+ CI EW+ R ++CP+C
Sbjct: 171 CSICLQDWEEGEVGRKLARCGHTFHMNCIDEWLLRQETCPIC 212