Jatropha Genome Database

JcCB0022671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022671.10 + phase: 2 /partial
         (423 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G03090.1 | Symbols:  | sequence-specific DNA binding / transc...   204   8e-53

>AT4G03090.1 | Symbols:  | sequence-specific DNA binding /
           transcription factor | chr4:1366495-1370937 REVERSE
          Length = 913

 Score =  204 bits (519), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 163/423 (38%), Positives = 222/423 (52%), Gaps = 62/423 (14%)

Query: 14  YLVRVFFNQLHSLISPADFEENQAQEIKFERSISLDKFSKLDINEHHQEAQSTVGYSPLL 73
            L+RVF +QL  LI  ++FEE+Q Q +K ++  +L                  +G++ L 
Sbjct: 533 LLLRVFCDQLQPLIH-SEFEESQVQ-VKVKKLFAL----------------LYIGFTILW 574

Query: 74  KKETSTLNNVSSNQKEEMSENSAFQEEQLNFKNERMNRGDDAMKEDKGKAGGTASAVS-- 131
                TL      +   +S      +E LN  NE  +   D   E      G    +   
Sbjct: 575 LICLVTLIQDIEGRGGNLSGK---LKELLNLNNEEASEDCDVRVEGVMTKQGVNEEIDTV 631

Query: 132 ---REMDRDFQNVETSGSDTSSTRGKNFVGQMGNGDFAKS-SDLVKENGRQGVQEDGKVG 187
              +E D D  N+ETSGSDTSS RGK  V +   G+  ++ S   K +    V+ED K  
Sbjct: 632 ERLKESDADASNLETSGSDTSSNRGKGLVEE---GELVQNMSKRFKGSASGEVKEDEKSE 688

Query: 188 T-IQFEEKPRKRKRTIMNDYQMSLIEKALVDEPDMQRNSASIQRWADKLSIHGSEV-TFS 245
           T + FE++ +KRKR+IMN  QM +IEKAL +EPD+QRNSAS Q WADK+S  GSEV T S
Sbjct: 689 TFLVFEKQKKKRKRSIMNADQMGMIEKALAEEPDLQRNSASRQLWADKISQKGSEVITSS 748

Query: 246 QLKNWLNNRKARLARAGKDVRAPVEFDSAHSVKQGMSTHSHDSPESRGEDN-------AP 298
           QLKNWLNNRKA+LARA K      +   AH      +  S D PES G++N        P
Sbjct: 749 QLKNWLNNRKAKLARANK------QTGPAHD-----NNSSGDLPESPGDENTWQQKPSTP 797

Query: 299 SGARLVPSTSRIGTSENAETSLAEFVGIGAAEFVQCKPGQYVVLVDKQGEEIGKAKVYQV 358
              + V  T + G +    +S +E  GI        K GQ V L+D++G+EIGK  V + 
Sbjct: 798 IKDQTVTETPKTGENLMRTSSSSE-EGI--------KQGQQVRLMDERGDEIGKGTVLRT 848

Query: 359 QGKWYGKNLEESETCVVDVTELKAD---RWVRLPYPSEATGTSFSEAETKLGVMRVLWDS 415
            G+W G +LE  + CVVDV EL          +PY S+  G +F+EA ++ GVMRV WD 
Sbjct: 849 DGEWNGLSLETRQICVVDVMELSESYDGSKKMIPYGSDDVGRTFTEANSRFGVMRVAWDV 908

Query: 416 NKI 418
           NK+
Sbjct: 909 NKL 911