Jatropha Genome Database

JcCB0022491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022491.10 - phase: 0 /pseudo
         (311 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10380.1 | Symbols: NIP5;1, NLM6, NLM8 | NIP5;1; arsenite tra...    81   8e-16
AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NIP6;1 (NOD26-LIKE I...    68   7e-12

>AT4G10380.1 | Symbols: NIP5;1, NLM6, NLM8 | NIP5;1; arsenite
          transmembrane transporter/ boron transporter/ water
          channel | chr4:6431530-6434510 REVERSE
          Length = 304

 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 24 LFSSLRVDSLSYD-RKSMPRCKCLPVNAPSWGQTHTCFTDFPAPDVSLTRKMDINF 78
          L + +RVDS+S+D RK  PRCKCLPV   +WGQ  TCFTDFP+PDVSLTRK+   F
Sbjct: 29 LITGMRVDSMSFDHRKPTPRCKCLPVMGSTWGQHDTCFTDFPSPDVSLTRKLGAEF 84



 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 236 VGRNCSWSNCCAKHSCCG-MNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVK 294
           VG     +   A  S  G MNPVRTLGPAVA+GNY+++W+YLVAP             VK
Sbjct: 228 VGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVK 287

Query: 295 LREDEADPPRQVRSFRR 311
           L +   DPPR VRSFRR
Sbjct: 288 LNDSVTDPPRPVRSFRR 304


>AT1G80760.1 | Symbols: NIP6;1, NIP6, NLM7 | NIP6;1 (NOD26-LIKE
           INTRINSIC PROTEIN 6;1); boron transporter/ glycerol
           transmembrane transporter/ urea transmembrane
           transporter/ water channel/ water transporter |
           chr1:30350640-30352015 REVERSE
          Length = 305

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 250 SCCGMNPVRTLGPAVAAGNYKAIWIYLVAPIXXXXXXXXXXXXVKL-REDEADPPRQVRS 308
           +   MNPVRTLGPA+AA NY+AIW+YL API            VKL  EDEA  P++ RS
Sbjct: 245 TSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEEDEA--PKERRS 302

Query: 309 FRR 311
           FRR
Sbjct: 303 FRR 305